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Report for CCDS22335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22335.1 Public Mus musculus 8 Npy5r 23 108 98 CCDS HistoryNCBI Gene:18168Re-query CCDS DB by CCDS ID:22335.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22335.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070810.7 ENSMUSP00000065157.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070810.7Link to Ensembl Protein Viewer:ENSMUSP00000065157.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000070810Re-query CCDS DB by Protein ID:ENSMUSP00000065157
Original member Current member EBI ENSMUST00000211920.1 ENSMUSP00000148410.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211920.1Link to Ensembl Protein Viewer:ENSMUSP00000148410.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211920Re-query CCDS DB by Protein ID:ENSMUSP00000148410
Original member Current member EBI ENSMUST00000212563.1 ENSMUSP00000148589.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212563.1Link to Ensembl Protein Viewer:ENSMUSP00000148589.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212563Re-query CCDS DB by Protein ID:ENSMUSP00000148589
Original member Current member NCBI NM_001358957.1 NP_001345886.1 Accepted alive Link to Nucleotide Sequence:NM_001358957.1Link to Protein Sequence:NP_001345886.1Re-query CCDS DB by Nucleotide ID:NM_001358957Re-query CCDS DB by Protein ID:NP_001345886Link to BLAST:NP_001345886.1
Original member Current member NCBI NM_001358958.1 NP_001345887.1 Accepted alive Link to Nucleotide Sequence:NM_001358958.1Link to Protein Sequence:NP_001345887.1Re-query CCDS DB by Nucleotide ID:NM_001358958Re-query CCDS DB by Protein ID:NP_001345887Link to BLAST:NP_001345887.1
Original member Current member NCBI NM_016708.3 NP_057917.2 Accepted alive Link to Nucleotide Sequence:NM_016708.3Link to Protein Sequence:NP_057917.2Re-query CCDS DB by Nucleotide ID:NM_016708Re-query CCDS DB by Protein ID:NP_057917Link to BLAST:NP_057917.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345886.1 466 O70342 466 100% 0 0
NP_001345887.1 466 O70342 466 100% 0 0
NP_057917.2 466 O70342 466 100% 0 0

Chromosomal Locations for CCDS 22335.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 66680739 66682139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGAGGTTAAACTTGAAGAGCATTTTAACAAGACATTTGTCACGGAGAACAATACTGCTGCCAGTCAGA
ACACGGCCTCCCCTGCCTGGGAGGACTACAGAGGCACAGAGAACAATACTTCTGCTGCTCGGAACACTGC
CTTTCCAGTCTGGGAGGACTATAGAGGCAGCGTAGACGACTTACAATACTTCCTGATTGGGCTCTATACA
TTTGTAAGTCTTCTTGGTTTTATGGGAAATCTACTTATCTTAATGGCTGTTATGAAAAAGCGCAATCAGA
AGACTACAGTGAACTTTCTCATAGGCAACCTGGCCTTCTCCGACATTTTGGTTGTCCTGTTTTGCTCCCC
TTTCACCCTGACCTCTGTCTTGTTGGATCAGTGGATGTTCGGCAAAGCCATGTGCCATATCATGCCATTC
CTTCAGTGTGTATCAGTTCTGGTTTCAACTCTGATTTTAATATCGATTGCCATTGTCAGGTATCATATGA
TAAAGCACCCTATATCTAACAATTTAACAGCAAACCATGGCTACTTCCTGATAGCTACTGTCTGGACACT
GGGCTTTGCCATCTGTTCTCCCCTCCCAGTGTTTCACAGCCTTGTGGAACTTAAGGAAACCTTTGGCTCA
GCATTGCTAAGCAGCAAGTATTTGTGTGTTGAGTCATGGCCCTCTGATTCATACAGAATTGCTTTCACAA
TCTCTTTATTGTTAGTTCAGTATATCCTGCCTCTAGTATGTTTAACAGTAAGTCATACTAGTGTCTGCAG
GAGTATAAGCTGTGGATTGTCCCACAAAGAAAACAGACTCGAAGAAAATGAGATGATCAACTTAACTCTA
CATCCATCCAAAAAGAGTCGGGACCAGGCAAAACCCCCCAGCACTCAAAAGTGGAGCTACTCATTCATCA
GAAAGCACCGAAGAAGGTACAGCAAGAAGACGGCATGCGTGTTACCCGCCCCAGCAGGACCTTCCCAGGA
GAAGCACCTAACCGTTCCAGAAAACCCAGGCTCGGTCCGTAGCCAGCTGTCACCATCCAGTAAGGTTATT
CCAGGGGTCCCGATCTGCTTTGAGGTGAAACCTGAAGAAAGCTCAGATGCTCAGGAGATGAGAGTCAAGC
GTTCCCTCACGAGAATAAAGAAGAGATCTCGCAGTGTTTTCTACAGACTGACTATATTGATATTAGTGTT
CGCTGTTAGCTGGATGCCACTCCACGTCTTCCACGTGGTGACCGATTTCAATGATAACCTGATTTCCAAT
AGGCATTTCAAGCTGGTGTACTGCATCTGTCACTTGTTAGGCATGATGTCCTGTTGTCTTAATCCGATCT
TATATGGATTCCTTAATAATGGTATCAAAGCAGACTTGAGAGCCCTTATCCACTGCCTACACATGTCATG
A

Translation (466 aa):
MEVKLEEHFNKTFVTENNTAASQNTASPAWEDYRGTENNTSAARNTAFPVWEDYRGSVDDLQYFLIGLYT
FVSLLGFMGNLLILMAVMKKRNQKTTVNFLIGNLAFSDILVVLFCSPFTLTSVLLDQWMFGKAMCHIMPF
LQCVSVLVSTLILISIAIVRYHMIKHPISNNLTANHGYFLIATVWTLGFAICSPLPVFHSLVELKETFGS
ALLSSKYLCVESWPSDSYRIAFTISLLLVQYILPLVCLTVSHTSVCRSISCGLSHKENRLEENEMINLTL
HPSKKSRDQAKPPSTQKWSYSFIRKHRRRYSKKTACVLPAPAGPSQEKHLTVPENPGSVRSQLSPSSKVI
PGVPICFEVKPEESSDAQEMRVKRSLTRIKKRSRSVFYRLTILILVFAVSWMPLHVFHVVTDFNDNLISN
RHFKLVYCICHLLGMMSCCLNPILYGFLNNGIKADLRALIHCLHMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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