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Report for CCDS24794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24794.1 Public Mus musculus 11 Alkbh5 23 108 98 CCDS HistoryNCBI Gene:268420Re-query CCDS DB by CCDS ID:24794.1Re-query CCDS DB by GeneID:268420See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044250.3 ENSMUSP00000049116.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044250.3Link to Ensembl Protein Viewer:ENSMUSP00000049116.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000044250Re-query CCDS DB by Protein ID:ENSMUSP00000049116
Original member Current member NCBI NM_172943.4 NP_766531.2 Accepted alive Link to Nucleotide Sequence:NM_172943.4Link to Protein Sequence:NP_766531.2Re-query CCDS DB by Nucleotide ID:NM_172943Re-query CCDS DB by Protein ID:NP_766531Link to BLAST:NP_766531.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766531.2 395 Q3TSG4 395 100% 0 0

Chromosomal Locations for CCDS 24794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60538423 60539195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60547688 60547768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60553714 60553869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60554238 60554415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGGCGGCCGCCAGCGGCTACACCGACCTGCGGGAGAAGCTCAAGTCCATGACGTCCCGGGACAACTACA
AGGCGGGCAGTCGGGAGGCCGCCGCCGCTGCGGCCGCCGCCGTGGCTGCCGCTGCCGCTGCCGCGGCCGC
CGCTGAGCCTTACCCGGCGTCCGGGACCACCAAGCGGAAATACCAGGAGGACTCGGACCCCGAGCGCAGC
GACTACGAGGAGCATCAGTTGCAGAAGGAGGAAGAGGCGCGCAAGGTGAAGAGCGGCATCCGGCAGATCC
GGCTCTTCAGTCAGGATGAGTGCTCCAAGATCGAGGCCCGCATCGATGAGGTGGTGTCCCGCGCCGAGAA
GGGCCTGTACAACGAGCACACGGTGGACCGGGCCCCCCTGCGCAACAAGTACTTCTTCGGCGAGGGCTAC
ACGTACGGGGCCCAGCTGCAGAAGCGCGGGCCGGGCCAGGAGCGCCTCTACCCGCCGGGCGACGTCGACG
AGATCCCGGACTGGGTGCATCAGCTGGTGATCCAGAAGCTGGTGGAGCACCGCGTCATCCCCGAGGGCTT
CGTCAACAGCGCGGTCATCAACGACTACCAGCCCGGCGGCTGCATCGTGTCCCACGTTGACCCCATCCAC
ATCTTCGAGCGCCCCATCGTGTCCGTGTCTTTCTTCAGCGACTCGGCACTTTGCTTCGGCTGCAAGTTCC
AGTTCAAGCCCATCCGGGTGTCGGAACCTGTGCTTTCTCTGCCGGTGCGCAGGGGGAGCGTGACTGTGCT
CAGTGGGTATGCTGCTGATGAAATCACTCACTGCATACGGCCTCAGGACATTAAGGAACGCCGGGCGGTC
ATCATTCTCAGGAAGACAAGATTAGATGCACCGCGATTGGAAACAAAATCCCTGAGCAGCTCCACATTGC
CACCCAGCTATGCTTCAGATCGCCTGTCAGGAAACACCAGAGACCCTGCGCTGAAACCCAAAAGGTCCCA
CCGCAAGGCAGACCCTGATGCTGCCCACAGGCCCCGGATCCTGGAAATGGACAAAGAAGAAAACCGGCGG
TCTGTGCTCCTGCCCACACACCGGCGGAGGGGGAGTTTTAGCTCTGAGAACTATTGGCGCAAATCCTATG
AGTCCTCGGAAGATTGCCCAGAGGCAGCCAGCAGCCCCACCCGCAAGGTGAAGATGAGGAGACACTGA

Translation (395 aa):
MAAASGYTDLREKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAEPYPASGTTKRKYQEDSDPERS
DYEEHQLQKEEEARKVKSGIRQIRLFSQDECSKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGY
TYGAQLQKRGPGQERLYPPGDVDEIPDWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIH
IFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIKERRAV
IILRKTRLDAPRLETKSLSSSTLPPSYASDRLSGNTRDPALKPKRSHRKADPDAAHRPRILEMDKEENRR
SVLLPTHRRRGSFSSENYWRKSYESSEDCPEAASSPTRKVKMRRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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