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Report for CCDS38807.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38807.1 Public Mus musculus 4 Gm13275 23 108 98 CCDS HistoryNCBI Gene:545652Re-query CCDS DB by CCDS ID:38807.1Re-query CCDS DB by GeneID:545652See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38807.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178347.2 ENSMUSP00000137245.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178347.2Link to Ensembl Protein Viewer:ENSMUSP00000137245.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178347Re-query CCDS DB by Protein ID:ENSMUSP00000137245
Original member Current member NCBI NM_001085533.2 NP_001079002.1 Accepted alive Link to Nucleotide Sequence:NM_001085533.2Link to Protein Sequence:NP_001079002.1Re-query CCDS DB by Nucleotide ID:NM_001085533Re-query CCDS DB by Protein ID:NP_001079002Link to BLAST:NP_001079002.1

Chromosomal Locations for CCDS 38807.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 88794487 88795035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGCTGCCTGTGCATATATTCCTGGTGGGAGGGGTGATGCTGAGCTGCAGCCCAGCCAGCTCACTTGATT
CTGGTAAATCTGGGAGCCTGCACCTGGAGCGCAGCGAAACCGCGCGCTTCCTAGCAGAGCTCCGAAGCGT
GCCGGGTCACCAGTGCCTGCGGGACAGGACCGATTTCCCATGTCCCTGGAAGGAAGGAACTAACATCACA
CCGATGACTCTGGGAGAAACCACCAGTTGCTACTCCCAGACCCTCAGGCAGGTCCTCCACCTCTTTGACA
CAGAGGCCAGCAGAGCTGCCTGGCACGAGAGGGCGCTGGACCAGCTACTATCTAGCCTGTGGCGTGAGCT
GCAAGTGCTGAAGAGGCCAAGAGAGCAGGGCCAGTCCTGTCCACTGCCTTTTGCCCTGGCCATCCGCACC
TACTTCCGAGGGTTCTTCCGCTATCTGAAGGCAAAGGCACACAGCGCTTGCTCCTGGGAGATCGTCAGAG
TCCAATTGCAAGTGGACCTTCCAGCGTTCCCACTGTCTGCGAGAAGAGGCCCAAGATGA

Translation (182 aa):
MLPVHIFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNIT
PMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRT
YFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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