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Report for CCDS9063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9063.1 Public Homo sapiens 12 NEDD1 24 110 108 CCDS HistoryNCBI Gene:121441Re-query CCDS DB by CCDS ID:9063.1Re-query CCDS DB by GeneID:121441See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9063.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266742.9 ENSP00000266742.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266742.9Link to Ensembl Protein Viewer:ENSP00000266742.5Re-query CCDS DB by Nucleotide ID:ENST00000266742Re-query CCDS DB by Protein ID:ENSP00000266742
Original member Current member EBI ENST00000429527.6 ENSP00000404978.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429527.6Link to Ensembl Protein Viewer:ENSP00000404978.2Re-query CCDS DB by Nucleotide ID:ENST00000429527Re-query CCDS DB by Protein ID:ENSP00000404978
Original member Current member NCBI NM_001135176.2 NP_001128648.1 Accepted alive Link to Nucleotide Sequence:NM_001135176.2Link to Protein Sequence:NP_001128648.1Re-query CCDS DB by Nucleotide ID:NM_001135176Re-query CCDS DB by Protein ID:NP_001128648Link to BLAST:NP_001128648.1
Original member Current member NCBI NM_152905.4 NP_690869.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152905.4Link to Protein Sequence:NP_690869.1Re-query CCDS DB by Nucleotide ID:NM_152905Re-query CCDS DB by Protein ID:NP_690869Link to BLAST:NP_690869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128648.1 660 Q8NHV4-1 660 100% 0 0
NP_690869.1 660 Q8NHV4-1 660 100% 0 0

Chromosomal Locations for CCDS 9063.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 96909760 96909895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96912723 96912817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96917621 96917737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96919985 96920125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96934976 96935205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96936611 96936812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96937198 96937393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96940409 96940537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96942577 96942624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96943560 96943762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96944639 96944795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96945693 96945849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96951432 96951498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96951949 96952053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGCAGGAAAACCTCAGATTTGCTTCATCAGGAGATGATATTAAAATATGGGATGCTTCATCTATGACAT
TGGTGGATAAATTCAACCCACACACATCACCACATGGAATCAGCTCAATATGTTGGAGCAGCAATAATAA
CTTTTTAGTAACAGCATCTTCCAGTGGCGACAAAATAGTTGTCTCAAGTTGCAAATGTAAACCTGTTCCA
CTTTTAGAGCTTGCTGAAGGGCAAAAGCAGACATGTGTCAATTTAAATTCTACATCTATGTATTTGGTAA
GCGGAGGCCTAAATAACACTGTTAATATTTGGGATTTAAAATCAAAAAGAGTTCATCGATCTCTTAAGGA
TCATAAAGATCAAGTAACTTGTGTAACATACAATTGGAATGATTGCTACATTGCTTCTGGATCTCTTAGT
GGTGAAATTATTTTACACAGTGTAACCACTAATTTATCTAGTACTCCTTTTGGCCATGGTAGTAACCAGT
CTGTTCGGCACTTGAAGTACTCCTTGTTTAAGAAATCACTACTGGGCAGTGTTTCGGATAATGGAATAGT
AACTCTCTGGGATGTAAATAGTCAGAGTCCATACCATAACTTTGACAGTGTACACAAAGCTCCAGCGTCA
GGCATCTGTTTTTCTCCTGTCAATGAATTGCTCTTTGTAACCATAGGCTTGGATAAAAGAATCATCCTCT
ATGACACTTCAAGTAAGAAGCTAGTGAAAACTTTAGTGGCTGACACTCCTCTAACTGCGGTAGATTTCAT
GCCTGATGGAGCCACTTTGGCTATTGGATCTTCCCGGGGGAAAATATATCAATATGATTTAAGAATGTTG
AAATCACCAGTTAAGACCATCAGTGCTCACAAGACATCTGTGCAGTGTATAGCATTTCAGTACTCCACTG
TTCTTACTAAGTCAAGTTTAAATAAAGGCTGTTCAAATAAGCCCACAACAGTGAACAAACGAAGTGTTAA
TGTGAATGCTGCTAGTGGAGGAGTTCAGAATTCCGGAATTGTCAGAGAAGCACCTGCCACGTCCATTGCC
ACAGTTCTACCACAACCTATGACATCAGCTATGGGGAAAGGAACAGTTGCTGTTCAAGAAAAAGCAGGTT
TGCCTCGAAGCATAAACACAGACACTTTATCTAAGGAAACAGACAGTGGAAAAAATCAGGATTTCTCCAG
CTTTGATGATACTGGGAAAAGTAGTTTAGGTGACATGTTCTCACCTATCAGAGATGATGCTGTAGTTAAC
AAGGGAAGTGATGAGTCCATAGGCAAAGGAGATGGCTTTGACTTTCTACCGCAGTTGAACTCAGTGTTTC
CTCCAAGAAAAAATCCAGTAACTTCAAGTACTTCAGTATTGCATTCTAGTCCTCTTAATGTTTTTATGGG
ATCTCCAGGGAAAGAGGAAAATGAAAACCGTGATCTAACAGCTGAGTCTAAGAAAATATATATGGGAAAA
CAGGAATCTAAAGACTCCTTCAAACAGTTAGCAAAGTTGGTCACATCTGGTGCTGAAAGTGGAAATCTAA
ATACCTCTCCATCATCTAACCAAACAAGAAATTCTGAGAAATTTGAAAAGCCAGAGAATGAAATTGAAGC
CCAGTTGATATGTGAACCCCCAATCAATGGATCCTCAACTCCAAATCCAAAGATAGCATCTTCTGTCACT
GCTGGAGTTGCCAGTTCACTCTCAGAAAAAATAGCCGACAGCATTGGAAATAACCGGCAAAATGCACCAT
TGACTTCCATTCAAATTCGTTTTATTCAGAACATGATACAGGAAACGTTGGATGACTTTAGAGAAGCATG
CCATAGGGACATTGTGAATTTGCAAGTGGAGATGATTAAACAGTTTCATATGCAACTGAATGAAATGCAT
TCTTTGCTGGAAAGATACTCAGTGAATGAAGGTTTAGTGGCTGAAATTGAAAGACTACGAGAAGAAAACA
AAAGATTACGGGCCCACTTTTGA

Translation (660 aa):
MQENLRFASSGDDIKIWDASSMTLVDKFNPHTSPHGISSICWSSNNNFLVTASSSGDKIVVSSCKCKPVP
LLELAEGQKQTCVNLNSTSMYLVSGGLNNTVNIWDLKSKRVHRSLKDHKDQVTCVTYNWNDCYIASGSLS
GEIILHSVTTNLSSTPFGHGSNQSVRHLKYSLFKKSLLGSVSDNGIVTLWDVNSQSPYHNFDSVHKAPAS
GICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLVADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRML
KSPVKTISAHKTSVQCIAFQYSTVLTKSSLNKGCSNKPTTVNKRSVNVNAASGGVQNSGIVREAPATSIA
TVLPQPMTSAMGKGTVAVQEKAGLPRSINTDTLSKETDSGKNQDFSSFDDTGKSSLGDMFSPIRDDAVVN
KGSDESIGKGDGFDFLPQLNSVFPPRKNPVTSSTSVLHSSPLNVFMGSPGKEENENRDLTAESKKIYMGK
QESKDSFKQLAKLVTSGAESGNLNTSPSSNQTRNSEKFEKPENEIEAQLICEPPINGSSTPNPKIASSVT
AGVASSLSEKIADSIGNNRQNAPLTSIQIRFIQNMIQETLDDFREACHRDIVNLQVEMIKQFHMQLNEMH
SLLERYSVNEGLVAEIERLREENKRLRAHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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