NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46162.1 Public Homo sapiens 19 ZNF836 24 110 108 CCDS HistoryNCBI Gene:162962Re-query CCDS DB by CCDS ID:46162.1Re-query CCDS DB by GeneID:162962See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46162.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000597252.5 ENSP00000470239.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000597252.5Link to Ensembl Protein Viewer:ENSP00000470239.1Re-query CCDS DB by Nucleotide ID:ENST00000597252Re-query CCDS DB by Protein ID:ENSP00000470239
Original member Current member EBI ENST00000682614.1 ENSP00000507838.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682614.1Link to Ensembl Protein Viewer:ENSP00000507838.1Re-query CCDS DB by Nucleotide ID:ENST00000682614Re-query CCDS DB by Protein ID:ENSP00000507838
Original member Current member NCBI NM_001102657.3 NP_001096127.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001102657.3Link to Protein Sequence:NP_001096127.1Re-query CCDS DB by Nucleotide ID:NM_001102657Re-query CCDS DB by Protein ID:NP_001096127Link to BLAST:NP_001096127.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096127.1 936 Q6ZNA1 936 100% 0 0

Chromosomal Locations for CCDS 46162.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 52154872 52157540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52160465 52160591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52168058 52168072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2811 nt):
ATGGCTCTTACACAGGGACCTTTGACATTCAGGGATGTAGCCATAGAATTCTCTCAGGAGGAGTGGAAAT
CCCTGGACCCTGTGCAGAAAGCTTTGTACTGGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTTCCT
GGGTATCCTTCCTAAATGTATGACCAAGGAATTACCACCAATAGGGAACAGTAATACAGGAGAAAAATGC
CAAACAGTGACGCTGGAAAGACATGAATGTTATGATGTTGAAAATTTTTACTTAAGGGAAATCCAGAAAA
ATCTACAGGACCTTGAGTTTCAATGGAAAGATGGTGAAATAAATTATAAAGAAGTGCCAATGACCTATAA
AAACAATCTTAATGGTAAAAGAGGTCAACATAGTCAAGAGGATGTAGAAAACAAATGTATTGAAAATCAG
CTTACATTAAGCTTTCAGTCACGTCTGACTGAACTGCAGAAATTTCAAACTGAAGGGAAAATTTATGAGT
GTAACCAATCTGAGAAGACAGTTAATAACAGTTCCCTAGTTTCACCACTTCAAAGAATTCTTCCTAGTGT
CCAAACCAACATTTCTAAAAAATATGAGAATGAGTTTTTGCAGCTGTCATTACCCACCCAACTTGAGAAA
ACACACATTAGGGAAAAACCTTATATGTGTAAAGGGTGTGGCAAAGCCTTTAGAGTGTCTTCAAGTCTTA
TTAACCATCAGATGGTACATACTACAGAGAAACCTTACAAATGCAATGAATGTGGCAAAGCCTTTCATCG
GGGCTCACTACTAACTATACATCAGATAGTCCATACAAGGGGGAAGCCATATCAATGTGGTGTATGTGGC
AAGATCTTCAGACAAAATTCAGATCTTGTAAATCACCGGAGAAGTCACACTGGAGAGAAACCGTACAAAT
GTAATGAATGTGGCAAGTCCTTTAGTCAAAGTTATAACCTTGCAATACATCAGAGAATTCACACTGGAGA
GAAACCTTACAAATGTAATGAGTGTGGGAAAACCTTCAAACAAGGCTCATGCCTCACTACACATCAGATA
ATCCATACAGGAGAGAAACCATATCAATGTGATATATGTGGCAAGGTCTTCAGGCAGAATTCTAATCTTG
TAAATCACCAGAGAATCCACACTGGAGAGAAACCATACAAATGCAACATATGTGGAAAGTCCTTTAGTCA
AAGTTCCAACCTGGCAACTCATCAGACAGTTCATAGTGGAAACAAACCTTACAAATGTGATGAGTGTGGC
AAAACCTTTAAACGGAGCTCCAGCCTCACTACACATCAGATAATCCATACAGGAGAGAAACCATATACAT
GTGATGTATGCGACAAGGTCTTCAGTCAACGTTCACAACTTGCAAGGCACCAGAGAAGTCATACTGGAGA
GAAACCTTACAAATGCAATGAATGTGGCAAGGTCTTCAGTCAGACTTCACATCTTGTGGGGCATCGGAGA
ATTCATACTGGAGAGAAACCTTACAAATGTGATAAATGTGGTAAAGCCTTTAAACAGGGCTCATTACTCA
CTCGACATAAGATAATTCATACCAGAGAGAAACGTTACCAATGCGGTGAATGTGGAAAGGTCTTTAGTGA
AAATTCATGCCTTGTAAGACATTTAAGAATTCATACTGGGGAGCAACCTTACAAATGTAATGTGTGTGGC
AAGGTCTTCAATTACAGTGGAAACCTTTCAATTCATAAGAGAATACATACGGGAGAGAAACCTTTCCAAT
GTAATGAATGTGGCACAGTCTTCAGGAACTACTCATGCCTAGCACGTCATCTAAGAATTCATACTGGGCA
GAAACCTTACAAATGTAATGTGTGTGGCAAGGTCTTCAATGACAGTGGAAACCTTTCAAATCATAAGAGA
ATTCATACTGGAGAGAAGCCGTTTCAATGTAACGAATGCGGCAAGGTTTTCAGTTACTACTCATGCCTAG
CACGTCATCGGAAAATTCATACCGGAGAGAAACCTTACAAATGTAATGATTGTGGCAAAGCCTATACTCA
GCGTTCAAGCCTCACTAAACATCTGATAATTCATACTGGAGAGAAACCTTACAATTGTAATGAGTTTGGA
GGGGCATTTATCCAAAGTTCAAAACTTGCAAGATATCACAGAAATCCTACTGGGGAGAAACCACACAAAT
GTAGCCATTGTGGTAGAACTTTTAGTCATATAACAGGCCTGACGTACCATCAGAGAAGGCATACTGGAGA
GATGCCATACAAATGTATTGAATGTGGCCAGGTCTTTAATTCCACTTCGAACCTTGCAAGGCATCGGAGA
ATTCACACTGGAGAGAAACCTTACAAATGTAATGAATGTGGCAAGGTCTTTCGTCATCAATCAACACTAG
CACGTCATCGGAGTATTCATACTGGAGAGAAACCTTACGTGTGTAATGAGTGTGGCAAAGCCTTTAGAGT
GCGTTCAATTCTGGTTAATCATCAGAAAATGCATACTGGGGACAAACCTTACAAATGTAATGAATGTGGT
AAAGCTTTTATTGAAAGGTCAAAGCTGGTGTACCATCAAAGAAATCACACTGGAGAGAAGCCATACAAAT
GTATTGAATGTGGCAAGGCCTTTGGGCGGTTTTCTTGCCTCAACAAACACCAAATGATTCATTCTGGAGA
AAAACCTTATAAATGTAATGAGTGTGGCAAATCTTTCATTAGTCGCTCAGGCCTCACTAAACATCAGACA
AAACATACTGCAGAGAGTCTTAAAACAAAATTCAATGTGGAAAAGCCTTTAGATGTTCTCCTAACTTCTG
GGTTCAAATAA

Translation (936 aa):
MALTQGPLTFRDVAIEFSQEEWKSLDPVQKALYWDVMLENYRNLVFLGILPKCMTKELPPIGNSNTGEKC
QTVTLERHECYDVENFYLREIQKNLQDLEFQWKDGEINYKEVPMTYKNNLNGKRGQHSQEDVENKCIENQ
LTLSFQSRLTELQKFQTEGKIYECNQSEKTVNNSSLVSPLQRILPSVQTNISKKYENEFLQLSLPTQLEK
THIREKPYMCKGCGKAFRVSSSLINHQMVHTTEKPYKCNECGKAFHRGSLLTIHQIVHTRGKPYQCGVCG
KIFRQNSDLVNHRRSHTGEKPYKCNECGKSFSQSYNLAIHQRIHTGEKPYKCNECGKTFKQGSCLTTHQI
IHTGEKPYQCDICGKVFRQNSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTVHSGNKPYKCDECG
KTFKRSSSLTTHQIIHTGEKPYTCDVCDKVFSQRSQLARHQRSHTGEKPYKCNECGKVFSQTSHLVGHRR
IHTGEKPYKCDKCGKAFKQGSLLTRHKIIHTREKRYQCGECGKVFSENSCLVRHLRIHTGEQPYKCNVCG
KVFNYSGNLSIHKRIHTGEKPFQCNECGTVFRNYSCLARHLRIHTGQKPYKCNVCGKVFNDSGNLSNHKR
IHTGEKPFQCNECGKVFSYYSCLARHRKIHTGEKPYKCNDCGKAYTQRSSLTKHLIIHTGEKPYNCNEFG
GAFIQSSKLARYHRNPTGEKPHKCSHCGRTFSHITGLTYHQRRHTGEMPYKCIECGQVFNSTSNLARHRR
IHTGEKPYKCNECGKVFRHQSTLARHRSIHTGEKPYVCNECGKAFRVRSILVNHQKMHTGDKPYKCNECG
KAFIERSKLVYHQRNHTGEKPYKCIECGKAFGRFSCLNKHQMIHSGEKPYKCNECGKSFISRSGLTKHQT
KHTAESLKTKFNVEKPLDVLLTSGFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH