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Report for CCDS19719.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19719.1 Public Mus musculus 5 Gtf2ird2 23 108 98 CCDS HistoryNCBI Gene:114674Re-query CCDS DB by CCDS ID:19719.1Re-query CCDS DB by GeneID:114674See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19719.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016086.9 ENSMUSP00000016086.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016086.9Link to Ensembl Protein Viewer:ENSMUSP00000016086.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000016086Re-query CCDS DB by Protein ID:ENSMUSP00000016086
Original member Current member NCBI NM_053266.1 NP_444496.1 Accepted alive Link to Nucleotide Sequence:NM_053266.1Link to Protein Sequence:NP_444496.1Re-query CCDS DB by Nucleotide ID:NM_053266Re-query CCDS DB by Protein ID:NP_444496Link to BLAST:NP_444496.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444496.1 936 Q99NI3 936 100% 0 0

Chromosomal Locations for CCDS 19719.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134191185 134191277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134192653 134192791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134194861 134194977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134196422 134196605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134197248 134197276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134201404 134201458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134202239 134202282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134203271 134203348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134206771 134206827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134208880 134208942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134211198 134211275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134213052 134213135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134213967 134214150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134214641 134214669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134216136 134217712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2811 nt):
ATGGCCCAAGTAGCAGTGACTACTCAGCCCACTGATGAGCCCTCAGACGGCAGGATGGTGGTGACGTTCC
TC
ATGTCTGCCCTGGAGTCCATGTGTAAAGAGCTGGCCAAGTCCAAGGCCGAGGTGGCCTGCATCGCTGT
G
TATGAGACAGACGTGTACGTGGTGGGGACGGAGCGGGGCTGTGCCTTTGTCAACGCCAGACAGGATCTC
CAG
AAAGACTTTGCACAGCACTGCCAGGGGGAAGGGCTGCCTGAAGAGAAGCCACTGTGTCTGGGAAATG
GG
GAGGCCTGTCCTGGAGAAGCCCAGCTGCTCAGGAGAGCCGTGCAGGACCATTTCTGCCTCTGTTACCG
T
AAAGCCTTGGGGACAACAGCCATGGTCCCTGTTCCCTACGAGCAGATGCTACAGGATGAGGCAGCTGTG
GTG
GTTCGGGGCCTTCCGGAAGGCCTGGCCTTCCAGCACCCAGACAATTACAGCCTTGCCACCCTGAAGT
GG
ATCCTGGAGAACAAAGCAGGGATCTCCTTCGCTGTAAAGAGGCCCTTCCTAGGTGCAGAGAGCCAGCT
G
GGTGGCCTTGGGATGGTGACAGATGCTGGGAGGCCGACAGTACCACCAAATGACAGCTATGGCCCTGTC
AGT
GTGAAAACTGAACCCATGGAAGATTCTGGCACTTCACCAAGGGCAGCAGCCATGCTAATCAAGACGG
AG
TCGGAAGATCCTAATTACAACGTGTGTAACGTGCAAGGAAGCCAGCATTTTTCCGCCAGCAGTGACGT
C
ACTGGAATGGAGCTACCATCTGAAGAGTCTACTCGGATGGTCGCTTTAGAGACCAATGAGGACCCCGAG
ACT
GAGGTAAAAATGGAAGGAAATGCAAGTCCATCCAACCTTGTAAACTCTGCAGCAGGTGTTGAAGACC
TT
AGGATCATACAGGTGACAGTCGCAGATAATGAGAAGGAGAGGCTCTCAGGCCTCGAAAAAATTAAGCA
A
CTGCGAGAACAAGTAAACGACCTCTTCAGCCGCAAGTTTGGGGAGGCGATCGGAGTGGACTTCCCCGTG
AAG
GTTCCCTACAGGAAAATCACCTTCAACCCTGGCTGTGTGGTGATTGATGGCATGCCTCCGGGGGTGG
TG
TTCAAAGCCCCCGGGTATCTGGAGATCAGCTCCATGAGGAGGATCCTGGATGCTGCAGACTTCATCAA
G
TTCACGGTCATTAGACCACTTCCTGGACTTGAACTCAGTAATGTGGGGAAACGGAAGATAGACCAGGAG
GGC
CGCGTGTTTCAAGAAAAGTGGGAGCGAGCCTATTTCTTCGTGGAGGTGCAGAACATCCCCACGTGTT
TG
ATCTGCAAGCAGAGCGTGTCGGTGTCCAAGGAGTACAACCTGCGCCGCCACTACCAGACCAACCACAG
C
CGGCACTATGACCAGTACTCGGGTCAGGCCCGGGAAGAGAAGCTTAGAGAGCTGAAAAGGGGACTGCGG
AAG
TATCTCCTGGGGGCCTCGGAGATCGTGTGTCCAGAGCAACCATTCCCCAATGCAAGTCCCCCCACGA
AC
TCCGCGGTGCAGCCGGCGGAAGAGGTGGCCGGGAGCTTATGGGAGAAGTTAAGACAGAAAATCCGCTC
C
TTTGTGGCGTACTCCATCGCCATCGATGAGATTACGGATATCAATGACACCACCCAGCTGGCCATCTTC
ATC
CGCGGCGTCGACGACAACTTCGACGTGTCCGAGGAACTTTTGGACACTGTGCCCATGACAGGCGCCA
AA
TCCGGGAATGAGATATTCCTGCGCGTTGAGAAGAGTCTCAAGAAGTTCAGTATCGATTGGTCCAAGCT
G
GTGAGCGTGGCCTCCACGGGCACGCCGGCCATGATGGATGCCAACAGCGGGCTGGTGACAAAGCTCAGA
GCC
AGGGCAGCCTCATGTTGCAAGGGAGCCGACCTCAAATCCGTGCGCTGTATCATTCACCCAGAGTGGC
TG
TGCGCCCAGAAGTTAAGAATGGGCCACGTCATGGACGTGGTGGTAGACTCGGTGAACTGGATCTGCTC
C
CGTGGCCTGAACCACGGCGACTTCACGACACTGCTCTACGAGCTGGACAGTCAGTATGGCAGCCTACTG
TAC
CACACGGCCCTCAAATGGCTGGGCCGAGGGCTGGTCCTCAGGAGGTTCTTCGAATCCTTGGAGGAAA
TA
GACTCGTTTATGTCTTCCCGGGGCAAACCTGTGCCCCAGCTCAGTTCTCGGGACTGGATCCTGGACCT
G
GCCTTCCTAGTGGACATGACGACGCACCTCAATACACTGGATGCCTCCCTCCAAGGCCATTCACAGATC
GTG
ACCCAGATGTATGACTTCATCCGGGCCTTCCTAGCGAAACTGTGCCTCTGGGAGACGCATCTGGCCA
GG
AACAACCTGGCCCACTTCCCCACGCTGAAATCGGTTTCCCGGAGTGAAAGCGACGGGCTCAACTACAT
C
CCTAAGATCGTGGAGCTGAAGGCCGAGTTCCAGAGGCGCCTGTCGGATTTCAAGTCGTGTGAGAGCGAG
CTC
ACCCTGTTCAGCTCCCCGTTTTCCACCACGATCGACAGCGTGCGCGAGGAGCTCCAGATGGAGGTGA
TC
GACCTGCAGTGCAACACGGTGCTGAGGACCAAGTACGACAAGGTGGGCGTCCCGGACTTCTACAAGCA
C
CTGTGGAGCAGTTACCCCAAATACAGGAGCCACTGTGCCAGGATGCTGTCCATGTTCAGCAGCACCCAC
ATC
TGCGAGCAGCTCTTCTCCATCCTGAAGCTGAGCAAGAAAGAGGCGCAGTGGGGCGCAGCACTCCAGG
TG
GCCACGTGA


Translation (936 aa):
MAQVAVTTQPTDEPSDGRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVYVVGTERGCAFVNARQDL
Q
KDFAQH
CQGEGLPEEKPLCLGNGEACPGEAQLLRRAVQDHFCLCYRKALGTTAMVPVPYEQMLQDEAAV
V
VRGLPEGLAFQHPDNYSLATLKWILENKAGISFAVK
RPFLGAESQLGGLGMVTDAGRPTVPPNDSYGPV
S
VKTEPMEDS
GTSPRAAAMLIKTESEDPNYNVCNVQGSQHFSASSDVTGMELPSEESTRMVALETNEDPE
T
EVKME
GNASPSNLVNSAAGVEDLRIIQVTVADNEKERLSGLEKIKQLREQVNDLFSRKFGEAIGVDFPV
K
VPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILDAADFIKFTVI
RPLPGLELSNVGKRKIDQE
G
RVFQEKWERAYFFVEVQNIPTCLICKQSVSVSKEYNLRRHYQTNHSRHYDQYSGQAREEKLRELKRGLR
K
YLLGASEIVCPEQPFPNASPPTNSAVQPAEEVAGSLWEKLRQKIRSFVAYSIAIDEITDINDTTQLAIF
I
RGVDDNFDVSEELLDTVPMTGAKSGNEIFLRVEKSLKKFSIDWSKLVSVASTGTPAMMDANSGLVTKLR
A
RAASCCKGADLKSVRCIIHPEWLCAQKLRMGHVMDVVVDSVNWICSRGLNHGDFTTLLYELDSQYGSLL
Y
HTALKWLGRGLVLRRFFESLEEIDSFMSSRGKPVPQLSSRDWILDLAFLVDMTTHLNTLDASLQGHSQI
V
TQMYDFIRAFLAKLCLWETHLARNNLAHFPTLKSVSRSESDGLNYIPKIVELKAEFQRRLSDFKSCESE
L
TLFSSPFSTTIDSVREELQMEVIDLQCNTVLRTKYDKVGVPDFYKHLWSSYPKYRSHCARMLSMFSSTH
I
CEQLFSILKLSKKEAQWGAALQVAT




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser