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Report for CCDS25414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25414.1 Public Mus musculus 11 Krt16 23 108 98 CCDS HistoryNCBI Gene:16666Re-query CCDS DB by CCDS ID:25414.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007280.8 ENSMUSP00000007280.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007280.8Link to Ensembl Protein Viewer:ENSMUSP00000007280.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000007280Re-query CCDS DB by Protein ID:ENSMUSP00000007280
Original member NCBI NM_008470.1 NP_032496.1 Updated not alive Link to Nucleotide Sequence:NM_008470.1Link to Protein Sequence:NP_032496.1Re-query CCDS DB by Nucleotide ID:NM_008470Re-query CCDS DB by Protein ID:NP_032496
Current member NCBI NM_008470.2 NP_032496.1 Accepted alive Link to Nucleotide Sequence:NM_008470.2Link to Protein Sequence:NP_032496.1Re-query CCDS DB by Nucleotide ID:NM_008470Re-query CCDS DB by Protein ID:NP_032496Link to BLAST:NP_032496.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032496.1 469 Q9Z2K1 469 100% 0 0

Chromosomal Locations for CCDS 25414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100246234 100246328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100246469 100246515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100246610 100246830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100247102 100247227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100247314 100247475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100247562 100247718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100247857 100247939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100248372 100248890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGCCACCTGCAGCCGCCAGTTCACCTCCTCCAGCTCCATGAAGGGCTCCTGTGGCATCGGTGGTGGCT
CTAGCCGCATGTCCTCCATCCTGGCTGGAGGATCCTGCCGGGCTCCCAGCACCTGCGGGGGCATGTCAGT
TACCTCCTCTCGCTTCTCCTCTGGGGGAGTCTGTGGGATTGGAGGTGGCTATGGTGGGAGCTTCAGCAGC
AGCAGTTTTGGTGGAGGACTTGGTAGTGGATTTGGTGGTCGATTTGATGGATTTGGTGGTGGTTTTGGTG
CTGGTCTTGGTGGTGGTCTTGGCGGTGGTATTGGTGATGGGCTCCTGGTGGGCAGTGAGAAAGTGACCAT
GCAGAACCTCAATGACCGCCTGGCCACCTACCTGGACAAGGTGCGTGCCCTGGAAGAGGCCAACAGAGAC
CTGGAGGTGAAGATCCGGGACTGGTACCAGAGGCAGCGGCCCACTGAGATCAAAGACTACAGCCCCTACT
TCAAGACCATTGAGGACCTGAAGAGCAAGATCATTATTGCCACCCAGGAGAATGCACAGTTCACTTTGCA
GATTGACAATGCCAGGCTGGCAGCTGATGACTTCAGGACCAAGTACGAGAATGAGCTGTTCTTGCGGCAG
TCCGTGGAGGGTGACATCAATGGCCTGCGCAAGGTGCTAGATGAGCTGACCCTGTCCAGAGCTGACCTGG
AAATGCAGATTGAAAACCTCAGAGAAGAGCTGGCCTTCCTGAAGAAGAACCATGAGGAGGAGATGCTTGC
CTTGAGGGGTCAGACTGGTGGGGACGTCAATGTGGAGATGGACGCAGCCCCCGGTGTGGACCTCAGCCGC
ATTCTGAATGAGATGAGGGACCAGTATGAGCAGATGGCAGAGAAGAACCGCAGAGATGTGGAGGCCTGGT
TCCTGAGAAAGACTGAGGAGCTGAACAAAGAGGTGGCCTCTAACAGTGATCTAATCCAGAGCAACCGCAG
CGAGGTGGCTGAGCTCCGCAGGGTGTTCCAGGGCCTGGAGATTGAACTGCAGTCCCAGCTCAGCATGAAA
GCATCCTTGGAGAACAGCCTAGAAGAGACCAAAGGCAGATACTGTATGCAGCTGTCCCAGATCCAGGGTT
TGATCAGCAGTGTGGAGGAGCAGCTGGCTCAGCTTCGCTGCGAGATGGAGCAGCAGAGCCAGGAGTACAA
CATCTTGTTGGATGTGAAGACAAGGCTGGAGCAGGAGATCGCCACCTACCGCCGTCTGCTGGATGGCGAG
AATATCCACTCCTCCTCACAGCACTCCTCTGGACAGTCCTATTCTTCTCGAGAAGTCTTCTCCTCATCCT
CCCGCCAGCCCCGGTCCATCCTCAAGGAGCAAGGTTCAACCAGCTTCAGCCAGAGCCAAAGTCAGAGTTC
CAGGGACTAA

Translation (469 aa):
MATCSRQFTSSSSMKGSCGIGGGSSRMSSILAGGSCRAPSTCGGMSVTSSRFSSGGVCGIGGGYGGSFSS
SSFGGGLGSGFGGRFDGFGGGFGAGLGGGLGGGIGDGLLVGSEKVTMQNLNDRLATYLDKVRALEEANRD
LEVKIRDWYQRQRPTEIKDYSPYFKTIEDLKSKIIIATQENAQFTLQIDNARLAADDFRTKYENELFLRQ
SVEGDINGLRKVLDELTLSRADLEMQIENLREELAFLKKNHEEEMLALRGQTGGDVNVEMDAAPGVDLSR
ILNEMRDQYEQMAEKNRRDVEAWFLRKTEELNKEVASNSDLIQSNRSEVAELRRVFQGLEIELQSQLSMK
ASLENSLEETKGRYCMQLSQIQGLISSVEEQLAQLRCEMEQQSQEYNILLDVKTRLEQEIATYRRLLDGE
NIHSSSQHSSGQSYSSREVFSSSSRQPRSILKEQGSTSFSQSQSQSSRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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