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Report for CCDS13187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13187.1 Public Homo sapiens 20 COX4I2 24 110 108 CCDS HistoryNCBI Gene:84701Re-query CCDS DB by CCDS ID:13187.1Re-query CCDS DB by GeneID:84701See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13187.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376075.4 ENSP00000365243.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376075.4Link to Ensembl Protein Viewer:ENSP00000365243.3Re-query CCDS DB by Nucleotide ID:ENST00000376075Re-query CCDS DB by Protein ID:ENSP00000365243
Original member Current member NCBI NM_032609.3 NP_115998.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032609.3Link to Protein Sequence:NP_115998.2Re-query CCDS DB by Nucleotide ID:NM_032609Re-query CCDS DB by Protein ID:NP_115998Link to BLAST:NP_115998.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115998.2 171 Q96KJ9 171 100% 0 0

Chromosomal Locations for CCDS 13187.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 31639018 31639099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31639933 31640097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31643404 31643535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31644768 31644904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGCTCCCCAGAGCTGCCTGGAGCTTGGTGCTGAGGAAAGGTGGAGGTGGAAGACGAGGGATGCACAGCT
CAGAAGGCACCACCCGTGGTGGGGGGAAGATGTCCCCCTACACCAACTGCTATGCCCAGCGCTACTACCC
CATGCCAGAAGAGCCCTTCTGCACAGAACTCAACGCTGAGGAGCAGGCCCTGAAGGAGAAGGAGAAGGGA
AGCTGGACCCAGCTGACCCACGCCGAAAAGGTGGCCTTGTACCGGCTCCAGTTCAATGAGACCTTTGCGG
AGATGAACCGTCGCTCCAATGAGTGGAAGACAGTGATGGGTTGTGTCTTCTTCTTCATTGGATTCGCAGC
TCTGGTGATTTGGTGGCAGCGGGTCTACGTATTTCCTCCAAAGCCGATCACCTTGACGGACGAGCGGAAA
GCCCAGCAGCTGCAGCGCATGCTGGACATGAAGGTGAATCCTGTGCAGGGCCTGGCCTCCCGCTGGGACT
ATGAGAAGAAGCAGTGGAAGAAGTGA

Translation (171 aa):
MLPRAAWSLVLRKGGGGRRGMHSSEGTTRGGGKMSPYTNCYAQRYYPMPEEPFCTELNAEEQALKEKEKG
SWTQLTHAEKVALYRLQFNETFAEMNRRSNEWKTVMGCVFFFIGFAALVIWWQRVYVFPPKPITLTDERK
AQQLQRMLDMKVNPVQGLASRWDYEKKQWKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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