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Report for CCDS52775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52775.1 Public Mus musculus 9 Trim29 23 108 98 CCDS HistoryNCBI Gene:72169Re-query CCDS DB by CCDS ID:52775.1Re-query CCDS DB by GeneID:72169See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034511.6 ENSMUSP00000034511.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034511.6Link to Ensembl Protein Viewer:ENSMUSP00000034511.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034511Re-query CCDS DB by Protein ID:ENSMUSP00000034511
Original member Current member NCBI NM_023655.2 NP_076144.2 Accepted alive Link to Nucleotide Sequence:NM_023655.2Link to Protein Sequence:NP_076144.2Re-query CCDS DB by Nucleotide ID:NM_023655Re-query CCDS DB by Protein ID:NP_076144Link to BLAST:NP_076144.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076144.2 587 Q8R2Q0 587 100% 0 0

Chromosomal Locations for CCDS 52775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 43310876 43311679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43319326 43319421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43320358 43320591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43322173 43322371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43324807 43324908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43327036 43327128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43329520 43329615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43332310 43332386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43335110 43335172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1764 nt):
ATGGAAGGTGCCGATGCCTGCAGGAGCAATGGGGCCAGCCCGGAAGCCAGGGACACCCGCAGCCCACCGG
GTCCCAGCGGCAGCCTAGAGAATGGCACTAAAGCAGACAGTAAGGACACCAAGACAACCAACGGGCACAG
TGGGGAGGTGACAGAGGGCAAGACCCTGGGCAGTGCCCTGAAGTCAGGGGAGGGGAAGAGTGGCCTATTT
TCCAGCAATGAGTGGCGCAGGCCTATCATCCAGTTTGTGGAGTCTGTCGACGACAAAGGCTCCAGTTACT
TCAGTATGGACTCTGCGGAAGGCAGGAGGTCCCCTTATGCGGGGCTCCAGTTGGGGGCTTCCAAGAAACC
TCCTGTGACCTTTGCTGAGAAGGGGGAGCTGCGAAAGTCCATTTTCTCCGAGCCCCGCAAACCCACGGTG
ACCATCGTGGAGCCCGGGGAAGTCCGCAGGAATAGCTACCCCAGGGCTGACTCCAGCCTCCTGGCGCGGG
CAAAGTCGGGCTCCGAGGAGGTGCTGTGCGACTCCTGCATCGGCAACAAGCAGAAGGCCGTCAAGTCCTG
CCTGGTGTGCCAGGCTTCCTTCTGTGAGCTGCATCTGAAGCCCCACCTGGAGGGCGCTGCCTTCCGGGAC
CACCAGCTGCTCGAGCCCATCCGAGACTTCGAGGCCCGAAAATGTCCCTTGCACGGCAAGACTATGGAGC
TCTTCTGTCAGACCGACCAGACCTGCATCTGTTATCTCTGCATGTTCCAGGAGCACAAGAACCACAGCAC
CGTGACGGTGGAGGAGGCCAAGGCAGAGAAGGAGACCGAGCTGTCACTGCAAAAGGAACAGCTGCAACTG
AAGATCATTGAGATTGAAGATGATGTTGAGAAGTGGCAAAAGGAGAAAGACCGGATCAAGAGCTTTACCA
CCAACGAGAAGGCGATCCTGGAGCAGAACTTCAGGGACCTGGTGAGGGAGCTGGAGAAGCAGAAGGAGGA
AGTACGGGCTGCACTGGAGCAGCGGGAGCAGGATGCTGTGGACCAAGTGAAGGTGATCGTGGATGCTCTG
GATGAGAGGGCCAAGGTGCTGCACGAGGACAAGCAGACCCGAGAGCAGCTGCACAACATCAGTGACTCGG
TGCTGTTCCTGCAGGAATTTGGTGCATTGATGAGCAATTACTCTCTCCCTCCACCTCTGCCCACCTACCA
TGTCCTGCTGGAGGGAGAGGGGCTGGGACAGTCTCTTGGCAACTGCAAGGATGACCTGCTCAATGTGTGC
ATGCGTCATGTTGAGAAGATGTGCAAGGCCGATTTGAGCCGCAACTTCATTGAGAGGAACCATATGGAAA
ATGGTGGGGACCATCGCTACATGAACAGCTACACCAGCAGCTATGGGAACGAGTGGAGCACGCCTGACAC
CATGAAAAGATACTCCATGTACCTCACGCCCAAGGGTGGGGGCCGGACATCCTACCAGCCATCCTCGCCT
AGCCGCCTCTCCAAGGAGACCAACCAGAAGAATTTTAACAATCTGTATGGCACAAAAGGCAACTATACCT
CCAGGGTCTGGGAGTACACATCCACGGTTCAGAATTCTGAGGATATGCCCACGGTGCAAGGCAACTCCTC
CTTCTCCCTGAAAGGCTTTCCCTCCCTCCTCCGGAGCCAAGTTCCCAAGGCCCAGCCTCAGACTTGGAAA
TCTGGCAAGCAGACTCTGCTGTCTCACTACCGGCCATTCTATGTCAACAAGGGCAGCGGCATCGGATCCA
ACGAGGCGCCCTGA

Translation (587 aa):
MEGADACRSNGASPEARDTRSPPGPSGSLENGTKADSKDTKTTNGHSGEVTEGKTLGSALKSGEGKSGLF
SSNEWRRPIIQFVESVDDKGSSYFSMDSAEGRRSPYAGLQLGASKKPPVTFAEKGELRKSIFSEPRKPTV
TIVEPGEVRRNSYPRADSSLLARAKSGSEEVLCDSCIGNKQKAVKSCLVCQASFCELHLKPHLEGAAFRD
HQLLEPIRDFEARKCPLHGKTMELFCQTDQTCICYLCMFQEHKNHSTVTVEEAKAEKETELSLQKEQLQL
KIIEIEDDVEKWQKEKDRIKSFTTNEKAILEQNFRDLVRELEKQKEEVRAALEQREQDAVDQVKVIVDAL
DERAKVLHEDKQTREQLHNISDSVLFLQEFGALMSNYSLPPPLPTYHVLLEGEGLGQSLGNCKDDLLNVC
MRHVEKMCKADLSRNFIERNHMENGGDHRYMNSYTSSYGNEWSTPDTMKRYSMYLTPKGGGRTSYQPSSP
SRLSKETNQKNFNNLYGTKGNYTSRVWEYTSTVQNSEDMPTVQGNSSFSLKGFPSLLRSQVPKAQPQTWK
SGKQTLLSHYRPFYVNKGSGIGSNEAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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