NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS41132.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41132.1 Public Mus musculus X Nxf3 23 108 98 CCDS HistoryNCBI Gene:245610Re-query CCDS DB by CCDS ID:41132.1Re-query CCDS DB by GeneID:245610See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41132.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080929.12 ENSMUSP00000079730.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080929.12Link to Ensembl Protein Viewer:ENSMUSP00000079730.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000080929Re-query CCDS DB by Protein ID:ENSMUSP00000079730
Original member Current member NCBI NM_001024141.4 NP_001019312.1 Accepted alive Link to Nucleotide Sequence:NM_001024141.4Link to Protein Sequence:NP_001019312.1Re-query CCDS DB by Nucleotide ID:NM_001024141Re-query CCDS DB by Protein ID:NP_001019312Link to BLAST:NP_001019312.1

Chromosomal Locations for CCDS 41132.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 136073260 136073313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136073422 136073482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136073856 136074029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136074700 136074772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136075335 136075377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136075484 136075599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136075831 136075889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136076008 136076115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136076261 136076316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136076387 136076455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136076736 136076772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136078196 136078305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136078781 136078869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136078991 136079096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136079361 136079465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136079560 136079643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136080622 136080775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136080964 136081123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136085097 136085100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGGGGCGCAGTTCTGAAACTAACCCCTTGCGAAGAAGAATGAGATGCAGGCGTATTTTCCAACAGAGAT
TTCTTAACTCGCCTGCTCACGTCAGTGATACAGTGCATACTTCATTTTATCAGCAGCCAGCCATGAGTAA
TCCTCCCATGCATACCCGAAGATACACTCCATATGGCATTCCATCCCGTTATCAGAGAGTCAGTGTACAG
AAATGGAACCAAACGGATGTTAACATGGAGGGAGGGTCAAAACCTCCAGAGAGAAAAATGCAGAGGGACA
AACAAGATGATACTTCAGAGAACTGGTTCAAGGTCACAATTCCCTTTGGCATAAAATATGATAAGAAGTG
GCTGCTGAATTTGATCCAGAGCCAGTGCAGCATCCCTTTCACTCCGGTGCAGTTTCACTATGAAAAGATG
CAGGCCCATTTTTTTGTTGACAATCCCAACATTGCCTTTATGCTGAAGGCCATCAGTGACAAGATTCTAG
ATGAGACTGATAATAAGCCTCAGAGTCACAGAACTCCATCTGTGATTCTGCAGCTGACTACAAACCAACA
ATGTGCTACTTCTCAGCGAGTTCTTAACCGGCAGAGACTTCCCTTTGACCAAGATTTGATGACCCGTCCT
ACTGACTTGGCACTGGTTCCTAGAAGGTATATGACTCCTTCCTTGAGTATCCATAAAGAGGATATGACCC
AGGTGAACTCTGAAGGGGAGGTGGCCAAGGTGCACGCCCCGGATCTAGAAAAGATATGTGCAGACCAAAG
CTCTCTGAGTACTACCATGCCGGATAAGTCCAGTAATATAAATTCAATTCTGGAATTGTTCCCCAAGTTA
CTAAGCCTGGATGGACAAGAATCACATAAACCAACTCTCTGTGGTCCTGAAGATCACAAGACCTTATCAG
CTTGCAAGGAAATTTTTTTTGGATCAGAATCCATAAAGACAATGGTCCTACAGTTCCTGAAGCAGTATTA
CTTCATCTATGACAATGGAGATCGGCAGGGACTCCTCAATGCTTATCATCCTGAGGCTTGCTTCACACTG
ACCATCCCCTTCAGTTCCATTGACTTATCCATGAACAGCTTGTGTGAGTACTTCAAGTTTAGCAGAAATA
TGAAAATTCTCAAGGATCCTTATATGCGGAGGCAGCTGCTGAAGCACAAGAAATGTGACATTATTCACTT
CCTTCGTACATTGCCCAAAACTCAACATGACCTCACCTCCTTTGTGGTGGACATATGTTTGCAGACAGAA
AAGATGCTCTGCTTCTCTGTTAGTGGGTTGTTCAAGGAAGTGGACAACAGCGCTCAAGGGTGCATGCATG
CCTTCACTCGGATTTTTGTTGTTACCCATGACAACAGTTCAGAACTCTGTATCATCAATGACAAGCTGTC
TGTGACTAATGTCCACGAGGTTCCCAGTGCCTCCACCCCTGTGGCCACATCGTCTACCAGTTATTTGCCT
TCATTCTCTCAAGATCAACAGGAGATGGTGCCAACATTCTGTGCCCAGTCTGGGGTGAATGTTGACAGGT
CTCAAAAATCCCTTCATGATGACCAGTGGAATTACAACAGAGCTATACAAAGCCTTGCTTTGCTCAAGGT
AGAGGACACGATCTCAGAGGATAAGTTCACACAGACAGATCCAAGATCCTAA

Translation (553 aa):
MGRSSETNPLRRRMRCRRIFQQRFLNSPAHVSDTVHTSFYQQPAMSNPPMHTRRYTPYGIPSRYQRVSVQ
KWNQTDVNMEGGSKPPERKMQRDKQDDTSENWFKVTIPFGIKYDKKWLLNLIQSQCSIPFTPVQFHYEKM
QAHFFVDNPNIAFMLKAISDKILDETDNKPQSHRTPSVILQLTTNQQCATSQRVLNRQRLPFDQDLMTRP
TDLALVPRRYMTPSLSIHKEDMTQVNSEGEVAKVHAPDLEKICADQSSLSTTMPDKSSNINSILELFPKL
LSLDGQESHKPTLCGPEDHKTLSACKEIFFGSESIKTMVLQFLKQYYFIYDNGDRQGLLNAYHPEACFTL
TIPFSSIDLSMNSLCEYFKFSRNMKILKDPYMRRQLLKHKKCDIIHFLRTLPKTQHDLTSFVVDICLQTE
KMLCFSVSGLFKEVDNSAQGCMHAFTRIFVVTHDNSSELCIINDKLSVTNVHEVPSASTPVATSSTSYLP
SFSQDQQEMVPTFCAQSGVNVDRSQKSLHDDQWNYNRAIQSLALLKVEDTISEDKFTQTDPRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH