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Report for CCDS50068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50068.1 Public Mus musculus 17 Hnrnpm 23 108 98 CCDS HistoryNCBI Gene:76936Re-query CCDS DB by CCDS ID:50068.1Re-query CCDS DB by GeneID:76936See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087582.12 ENSMUSP00000084864.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087582.12Link to Ensembl Protein Viewer:ENSMUSP00000084864.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087582Re-query CCDS DB by Protein ID:ENSMUSP00000084864
Original member Current member NCBI NM_001109913.1 NP_001103383.1 Accepted alive Link to Nucleotide Sequence:NM_001109913.1Link to Protein Sequence:NP_001103383.1Re-query CCDS DB by Nucleotide ID:NM_001109913Re-query CCDS DB by Protein ID:NP_001103383Link to BLAST:NP_001103383.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103383.1 690 Q9D0E1-2 690 100% 0 0

Chromosomal Locations for CCDS 50068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33646496 33646659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33648813 33648864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33649595 33650397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33652273 33652326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33658388 33658465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33658870 33658914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33660213 33660314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33663225 33663285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33664585 33664634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33665492 33665645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33666494 33666529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33666647 33666685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33668985 33669078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33669169 33669176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33670081 33670133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33677274 33677440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33685267 33685379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGGCGGCAGGGGTCGAAGCGGCAGCCGAAGTGGCGGCGACAGAACCCAAAATGGAGGAAGAGAGCGGCG
CGCCCTGCGTGCCGAGCGGCAACGGAGCTCCGGGCCCGAAGGGTGAAGAACGACCTACTCAGAATGAGAA
GAGGAAGGAGAAAAACATAAAAAGAGGAGGCAATCGCTTTGAGCCATATTCCAACCCAACTAAAAGATAC
AGAGCCTTCATTACAAATATACCTTTTGATGTGAAATGGCAGTCACTTAAAGACCTGGTTAAAGAAAAAG
TTGGTGAGGTAACATACGTGGAGCTCTTAATGGACGCTGAAGGAAAGTCAAGGGGATGTGCTGTTGTTGA
ATTCAAGATGGAGGAGAGCATGAAAAAAGCTGCTGAAGTTCTAAACAAGCATAGTCTGAGTGGAAGGCCA
CTGAAAGTCAAGGAAGATCCTGATGGTGAACATGCAAGGAGAGCAATGCAAAAGGCTGGAAGACTTGGAA
GCACAGTATTTGTAGCAAATCTGGATTATAAAGTTGGCTGGAAGAAACTGAAGGAAGTATTTAGTATGGC
TGGTGTGGTGGTCCGAGCAGACATTCTGGAAGATAAAGATGGGAAAAGTCGTGGAATAGGCATTGTGACT
TTTGAACAGTCCATTGAAGCTGTGCAAGCAATATCTATGTTTAATGGCCAGTTGCTGTTTGATAGACCGA
TGCACGTCAAGATGGATGAGAGGGCTTTACCAAAGGGAGACTTTTTTCCTCCTGAACGCCCACAGCAACT
TCCCCATGGACTTGGTGGTATTGGCATGGGATTAGGACCTGGAGGTCAGCCTATTGATGCCAACCATCTG
AGCAAAGGCATTGGAATGGGAAACCTAGGACCTGCAGGGATGGGAATGGAAGGCATAGGATTTGGAATAA
ATAAAATTGGAGGCATGGAAGGACCCTTTGGTGGTGGTATGGAAAACATGGGCCGATTTGGATCCGGGAT
GAACATGGGCCGAATAAATGAAATCCTAAGTAATGCACTGAAGAGAGGAGAGATCATTGCAAAACAGGGA
GGAGGTGGAGCTGGAGGCAGTGTCCCTGGGATCGAGAGGATGGGCCCTGGCATTGACCGCATTAGCGGTG
CTGGCATGGAGCGCATGGGCGCAGGCTTAGGCCATGGCATGGATCGAGTGGGCTCTGAGATTGAGCGCAT
GGGCCTGGTCATGGACCGCATGGGCTCAGTTGAGCGCATGGGCTCCAGCATTGAGCGCATGGGCCCACTA
GGCCTTGACCACATGGCCTCCAGTATTGAGCGCATGGGCCAGACCATGGAGCGCATTGGTTCTGGCGTGG
AGCGCATGGGTGCCGGCATGGGCTTCGGCCTGGAGCGCATGGCCGCACCCATTGACCGTGTGGGCCAAAC
CATTGAGCGCATGGGCTCTGGTGTAGAGCGCATGGGTCCTGCCATTGAACGCATGGGCCTAAGCATGGAT
CGGATGGTGCCCACAGGCATGGGGGCCAGCCTGGAGCGCATGGGTCCTGTGATGGATCGGATGGCCACCG
GCCTGGAGCGCATGGGCGCCAACAACCTGGAGCGCATGGGCCTGGAGCGTATGGGAGCCAACAGTCTTGA
GCGCATGGGCCTGGAGCGAATGGGCGCCAACAGCCTGGAACGTATGGGCCCTGCCATGGGCCCAGCATTG
GGCGCTGGTATTGAGCGAATGGGCCTGGCCATGGGTGGAGCCGGAGGTGCTAGCTTTGACCGAGCCATTG
AGATGGAGCGGGGCAACTTTGGAGGAAGCTTCGCAGGTTCCTTTGGCGGAGCTGGAGGCCATGCACCTGG
AGTAGCCAGGAAGGCCTGCCAGATATTTGTGAGAAATCTCCCATTTGATTTTACATGGAAGATGCTAAAG
GACAAGTTCAATGAATGTGGCCACGTGCTGTACGCCGACATCAAGATGGAGAACGGAAAGTCCAAGGGGT
GCGGTGTGGTTAAGTTTGAGTCTCCAGAGGTGGCTGAGAGAGCCTGCCGGATGATGAATGGCATGAAGCT
GAGTGGCCGAGAGATTGATGTTCGAATTGATAGAAATGCTTAA

Translation (690 aa):
MAAGVEAAAEVAATEPKMEEESGAPCVPSGNGAPGPKGEERPTQNEKRKEKNIKRGGNRFEPYSNPTKRY
RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRP
LKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVT
FEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHL
SKGIGMGNLGPAGMGMEGIGFGINKIGGMEGPFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQG
GGGAGGSVPGIERMGPGIDRISGAGMERMGAGLGHGMDRVGSEIERMGLVMDRMGSVERMGSSIERMGPL
GLDHMASSIERMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQTIERMGSGVERMGPAIERMGLSMD
RMVPTGMGASLERMGPVMDRMATGLERMGANNLERMGLERMGANSLERMGLERMGANSLERMGPAMGPAL
GAGIERMGLAMGGAGGASFDRAIEMERGNFGGSFAGSFGGAGGHAPGVARKACQIFVRNLPFDFTWKMLK
DKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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