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Report for CCDS89829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89829.1 Public Mus musculus 4 Rnf19b 23 108 98 CCDS HistoryNCBI Gene:75234Re-query CCDS DB by CCDS ID:89829.1Re-query CCDS DB by GeneID:75234See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 89829.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030584.10 ENSMUSP00000030584.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030584.10Link to Ensembl Protein Viewer:ENSMUSP00000030584.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030584Re-query CCDS DB by Protein ID:ENSMUSP00000030584
Original member Current member NCBI NM_001368763.1 NP_001355692.1 Accepted alive Link to Nucleotide Sequence:NM_001368763.1Link to Protein Sequence:NP_001355692.1Re-query CCDS DB by Nucleotide ID:NM_001368763Re-query CCDS DB by Protein ID:NP_001355692Link to BLAST:NP_001355692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355692.1 732 A2A7Q9 732 100% 0 0

Chromosomal Locations for CCDS 89829.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129058271 129058896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129071737 129071942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129073499 129073643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129075570 129075732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129076162 129076276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129078907 129079047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129080342 129080549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129082747 129082878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129083728 129084190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGGGCTCCGAGAAGGACTCCGAGTCGCCGCGCTCCACCTCGCTCCATGCGGCCGCCCCCGACCCTAAGT
GCCGCAGCGGCGGCCGGCGCCGGCGCCTCACCTTCCACAGCGTCTTCTCCGCCTCGGCCCGCGGCCGCCG
CGCCCGGACCAAGCCTCAGGCCGAACCGCCGCCCCCGGCTGCGCCGCCGCCGCCGCCGCCGCCCGCTCCG
GCCCCGGTTGAGGCTCAGGCCCCGCCGGTGGAAGCTCTGCCCTCCGAGCCCGCTGCCGAGGCTGAGGCGG
AGGCCGTGGCTGCCGGGCCGGAGGAGGACGAGGCGGCGGAGGGCGGCGGCGCGGAGGAGGTGGAGTGCCC
GCTGTGCCTGGTGCGCCTGCCGCCCGAGCGGGCCCCGCGCCTCCTCAGCTGCCCGCATCGCTCGTGCCGG
GACTGCCTCCGCCACTACCTGCGCCTGGAGATCAGCGAGAGCCGCGTGCCCATCAGCTGCCCCGAGTGCA
GCGAGCGGCTCAACCCACACGACATCCGTCTGCTGCTGGCCGACCCGCCGCTCATGCACAAGTACGAAGA
GTTCATGCTGCGCCGGTACCTGGCCTCGGACCCCGACTGCCGCTGGTGTCCGGCCCCTGACTGCGGTTAT
GCTGTTATTGCCTATGGCTGTGCCAGTTGCCCAAAGCTAACCTGTGAGAGGGAGGGCTGCCAGACTGAGT
TCTGCTACCACTGCAAGCAGATATGGCATCCAAACCAGACCTGCGATATGGCCCGTCAGCAGAGGGCTCA
GACTTTACGAGTTCGGACCAAGCACACTTCAGGTCTCAGTTACGGGCAAGAATCTGGACCAGCAGATGAC
ATCAAGCCATGCCCACGATGCAGTGCTTACATTATCAAGATGAATGATGGGAGCTGTAACCACATGACCT
GTGCAGTGTGTGGCTGTGAATTCTGCTGGCTTTGCATGAAAGAGATCTCTGACTTGCATTACCTCAGTCC
CTCTGGCTGTACATTCTGGGGCAAGAAGCCATGGAGCCGCAAAAAGAAAATTCTTTGGCAGTTGGGCACA
TTGATCGGTGCTCCGGTGGGGATCTCACTCATTGCTGGCATTGCAATTCCCGCCATGGTCATCGGCATCC
CTGTATACGTGGGGAGAAAGATTCACAGCAGGTACGAGGGAAGGAAAACCTCCAAGCACAAGAGGAATTT
GGCTATCACAGGAGGAGTGACCTTGTCAGTCATTGCATCCCCAGTAATCGCTGCTGTTAGCGTTGGTATT
GGTGTCCCCATTATGCTGGCATATGTTTATGGGGTTGTGCCCATTTCTCTTTGCCGTGGAGGTGGCTGTG
GAGTTAGCACAGCCAATGGAAAGGGGGTAAAAATTGAGTTTGATGAAGATGATGGTCCAATCACAGTGGC
AGATGCCTGGCGAGCCCTCAAGAACCCCAGCATCGGAGAAAGCAGCATTGAGGGCCTGACTAGTGTGCTG
AGTACCAGCGGAAGCCCTACAGATGGACTCAGTGTCATGCAGGGACCATACAGCGAGACAGCCAGCTTCG
CTGCCCTCTCAGGGGGCACACTGAGTGGTGGTATTCTCTCCAGCGGCAAGGGAAAGTACAGCCGGTTAGA
AGTTCAAGCTGATGTCCAAAAGGAAATTTTCCCCAAAGACACAGCCAGTCTTGGTGCAATTAGCGACAGC
GCAAGCACTCGTGCTATGGCCGGTTCCATAATCAGTTCCTACAACCCACAGGACAGAGAGTGCAACAATA
TGGAAATCCAAGTGGACATTGAAGCCAAACCAAGTCACTATCAGTTGGTGAGTGGCAGCAGCACAGAGGA
CTCGCTCCATGTCCATGCTCAGGTGGCAGAGAAGGAAGAAGAGGGTAATGGTGCTGGTGGTGGCAGCGGT
GGCAGTGAAGACGATCCCCCTTACAAACACCAAAGCTGTGAACAGAAAGACTGCCTGGCCAGCAAGGCTT
GGGACATCAGCCTGGCCCAGCCTGAGAGCATCCGCAGTGACCTGGAGAGCTCTGACACGCAGTCAGATGA
CGTGCCAGACATCACCTCAGATGAGTGTGGCTCGCCCCGCTCCCATGCTGCAGCCTGCCCCTCCACCCCC
CAAGTCCACGGTGCACCGAGCCCAAGTGCCCACAAGAACCTCGCTGCTCCAGCTGAGGGCCAGACTGTCT
TGAAGTCAGAAGAGTATGAAGTGGAATGA

Translation (732 aa):
MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTFHSVFSASARGRRARTKPQAEPPPPAAPPPPPPPAP
APVEAQAPPVEALPSEPAAEAEAEAVAAGPEEDEAAEGGGAEEVECPLCLVRLPPERAPRLLSCPHRSCR
DCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGY
AVIAYGCASCPKLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPADD
IKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGT
LIGAPVGISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVSVGI
GVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPSIGESSIEGLTSVL
STSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLEVQADVQKEIFPKDTASLGAISDS
ASTRAMAGSIISSYNPQDRECNNMEIQVDIEAKPSHYQLVSGSSTEDSLHVHAQVAEKEEEGNGAGGGSG
GSEDDPPYKHQSCEQKDCLASKAWDISLAQPESIRSDLESSDTQSDDVPDITSDECGSPRSHAAACPSTP
QVHGAPSPSAHKNLAAPAEGQTVLKSEEYEVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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