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Report for CCDS11294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11294.1 Public Homo sapiens 17 SLFN11 24 110 108 CCDS HistoryNCBI Gene:91607Re-query CCDS DB by CCDS ID:11294.1Re-query CCDS DB by GeneID:91607See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11294.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308377.8 ENSP00000312402.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000308377.8Link to Ensembl Protein Viewer:ENSP00000312402.4Re-query CCDS DB by Nucleotide ID:ENST00000308377Re-query CCDS DB by Protein ID:ENSP00000312402
Original member Current member EBI ENST00000394566.5 ENSP00000378067.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394566.5Link to Ensembl Protein Viewer:ENSP00000378067.1Re-query CCDS DB by Nucleotide ID:ENST00000394566Re-query CCDS DB by Protein ID:ENSP00000378067
Original member Current member EBI ENST00000685675.1 ENSP00000510787.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000685675.1Link to Ensembl Protein Viewer:ENSP00000510787.1Re-query CCDS DB by Nucleotide ID:ENST00000685675Re-query CCDS DB by Protein ID:ENSP00000510787
Original member Current member NCBI NM_001104587.2 NP_001098057.1 Accepted alive Link to Nucleotide Sequence:NM_001104587.2Link to Protein Sequence:NP_001098057.1Re-query CCDS DB by Nucleotide ID:NM_001104587Re-query CCDS DB by Protein ID:NP_001098057Link to BLAST:NP_001098057.1
Original member Current member NCBI NM_001104588.2 NP_001098058.1 Accepted alive Link to Nucleotide Sequence:NM_001104588.2Link to Protein Sequence:NP_001098058.1Re-query CCDS DB by Nucleotide ID:NM_001104588Re-query CCDS DB by Protein ID:NP_001098058Link to BLAST:NP_001098058.1
Original member Current member NCBI NM_001104589.2 NP_001098059.1 Accepted alive Link to Nucleotide Sequence:NM_001104589.2Link to Protein Sequence:NP_001098059.1Re-query CCDS DB by Nucleotide ID:NM_001104589Re-query CCDS DB by Protein ID:NP_001098059Link to BLAST:NP_001098059.1
Original member Current member NCBI NM_001104590.2 NP_001098060.1 Accepted alive Link to Nucleotide Sequence:NM_001104590.2Link to Protein Sequence:NP_001098060.1Re-query CCDS DB by Nucleotide ID:NM_001104590Re-query CCDS DB by Protein ID:NP_001098060Link to BLAST:NP_001098060.1
Original member Current member NCBI NM_001376007.1 NP_001362936.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001376007.1Link to Protein Sequence:NP_001362936.1Re-query CCDS DB by Nucleotide ID:NM_001376007Re-query CCDS DB by Protein ID:NP_001362936Link to BLAST:NP_001362936.1
Original member Current member NCBI NM_001376008.1 NP_001362937.1 Accepted alive Link to Nucleotide Sequence:NM_001376008.1Link to Protein Sequence:NP_001362937.1Re-query CCDS DB by Nucleotide ID:NM_001376008Re-query CCDS DB by Protein ID:NP_001362937Link to BLAST:NP_001362937.1
Original member Current member NCBI NM_001376009.1 NP_001362938.1 Accepted alive Link to Nucleotide Sequence:NM_001376009.1Link to Protein Sequence:NP_001362938.1Re-query CCDS DB by Nucleotide ID:NM_001376009Re-query CCDS DB by Protein ID:NP_001362938Link to BLAST:NP_001362938.1
Original member Current member NCBI NM_001376010.1 NP_001362939.1 Accepted alive Link to Nucleotide Sequence:NM_001376010.1Link to Protein Sequence:NP_001362939.1Re-query CCDS DB by Nucleotide ID:NM_001376010Re-query CCDS DB by Protein ID:NP_001362939Link to BLAST:NP_001362939.1
Original member Current member NCBI NM_001376011.1 NP_001362940.1 Accepted alive Link to Nucleotide Sequence:NM_001376011.1Link to Protein Sequence:NP_001362940.1Re-query CCDS DB by Nucleotide ID:NM_001376011Re-query CCDS DB by Protein ID:NP_001362940Link to BLAST:NP_001362940.1
Original member Current member NCBI NM_001387158.1 NP_001374087.1 Accepted alive Link to Nucleotide Sequence:NM_001387158.1Link to Protein Sequence:NP_001374087.1Re-query CCDS DB by Nucleotide ID:NM_001387158Re-query CCDS DB by Protein ID:NP_001374087Link to BLAST:NP_001374087.1
Original member Current member NCBI NM_001387159.1 NP_001374088.1 Accepted alive Link to Nucleotide Sequence:NM_001387159.1Link to Protein Sequence:NP_001374088.1Re-query CCDS DB by Nucleotide ID:NM_001387159Re-query CCDS DB by Protein ID:NP_001374088Link to BLAST:NP_001374088.1
Original member Current member NCBI NM_001387160.1 NP_001374089.1 Accepted alive Link to Nucleotide Sequence:NM_001387160.1Link to Protein Sequence:NP_001374089.1Re-query CCDS DB by Nucleotide ID:NM_001387160Re-query CCDS DB by Protein ID:NP_001374089Link to BLAST:NP_001374089.1
Original member Current member NCBI NM_001387161.1 NP_001374090.1 Accepted alive Link to Nucleotide Sequence:NM_001387161.1Link to Protein Sequence:NP_001374090.1Re-query CCDS DB by Nucleotide ID:NM_001387161Re-query CCDS DB by Protein ID:NP_001374090Link to BLAST:NP_001374090.1
Original member Current member NCBI NM_001387162.1 NP_001374091.1 Accepted alive Link to Nucleotide Sequence:NM_001387162.1Link to Protein Sequence:NP_001374091.1Re-query CCDS DB by Nucleotide ID:NM_001387162Re-query CCDS DB by Protein ID:NP_001374091Link to BLAST:NP_001374091.1
Original member Current member NCBI NM_001387163.1 NP_001374092.1 Accepted alive Link to Nucleotide Sequence:NM_001387163.1Link to Protein Sequence:NP_001374092.1Re-query CCDS DB by Nucleotide ID:NM_001387163Re-query CCDS DB by Protein ID:NP_001374092Link to BLAST:NP_001374092.1
Original member Current member NCBI NM_152270.4 NP_689483.3 Accepted alive Link to Nucleotide Sequence:NM_152270.4Link to Protein Sequence:NP_689483.3Re-query CCDS DB by Nucleotide ID:NM_152270Re-query CCDS DB by Protein ID:NP_689483Link to BLAST:NP_689483.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098057.1 901 Q7Z7L1 901 100% 0 0
NP_001098058.1 901 Q7Z7L1 901 100% 0 0
NP_001098059.1 901 Q7Z7L1 901 100% 0 0
NP_001098060.1 901 Q7Z7L1 901 100% 0 0
NP_001362936.1 901 Q7Z7L1 901 100% 0 0
NP_001362937.1 901 Q7Z7L1 901 100% 0 0
NP_001362938.1 901 Q7Z7L1 901 100% 0 0
NP_001362939.1 901 Q7Z7L1 901 100% 0 0
NP_001362940.1 901 Q7Z7L1 901 100% 0 0
NP_001374087.1 901 Q7Z7L1 901 100% 0 0
NP_001374088.1 901 Q7Z7L1 901 100% 0 0
NP_001374089.1 901 Q7Z7L1 901 100% 0 0
NP_001374090.1 901 Q7Z7L1 901 100% 0 0
NP_001374091.1 901 Q7Z7L1 901 100% 0 0
NP_001374092.1 901 Q7Z7L1 901 100% 0 0
NP_689483.3 901 Q7Z7L1 901 100% 0 0

Chromosomal Locations for CCDS 11294.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35352356 35353139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35353336 35354059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35360243 35360371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35362739 35363807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2706 nt):
ATGGAGGCAAATCAGTGCCCCCTGGTTGTGGAACCATCTTACCCAGACCTGGTCATCAATGTAGGAGAAG
TGACTCTTGGAGAAGAAAACAGAAAAAAGCTGCAGAAAATTCAGAGAGACCAAGAGAAGGAGAGAGTTAT
GCGGGCTGCATGTGCTTTATTAAACTCAGGAGGAGGAGTGATTCGAATGGCCAAGAAGGTTGAGCATCCC
GTGGAGATGGGACTGGATTTAGAACAGTCTTTGAGAGAGCTTATTCAGTCTTCAGATCTGCAGGCTTTCT
TTGAGACCAAGCAACAAGGAAGGTGTTTTTACATTTTTGTTAAATCTTGGAGCAGTGGCCCTTTCCCTGA
AGATCGCTCTGTCAAGCCCCGCCTTTGCAGCCTCAGTTCTTCATTATACCGTAGATCTGAGACCTCTGTG
CGTTCCATGGACTCAAGAGAGGCATTCTGTTTCCTGAAGACCAAAAGGAAGCCAAAAATCTTGGAAGAAG
GACCTTTTCACAAAATTCACAAGGGTGTATACCAAGAGCTCCCTAACTCGGATCCTGCTGACCCAAACTC
GGATCCTGCTGACCTAATTTTCCAAAAAGACTATCTTGAATATGGTGAAATCCTGCCTTTTCCTGAGTCT
CAGTTAGTAGAGTTTAAACAGTTCTCTACAAAACACTTCCAAGAATATGTAAAAAGGACAATTCCAGAAT
ACGTCCCTGCATTTGCAAACACTGGAGGAGGCTATCTTTTTATTGGAGTGGATGATAAGAGTAGGGAAGT
CCTGGGATGTGCAAAAGAAAATGTTGACCCTGACTCTTTGAGAAGGAAAATAGAACAAGCCATATACAAA
CTACCTTGTGTTCATTTTTGCCAACCCCAACGCCCGATAACCTTCACACTCAAAATTGTGAATGTGTTAA
AAAGGGGAGAGCTCTATGGCTATGCTTGCATGATCAGAGTAAATCCCTTCTGCTGTGCAGTGTTCTCAGA
AGCTCCCAATTCATGGATAGTGGAGGACAAGTACGTCTGCAGCCTGACAACCGAGAAATGGGTAGGCATG
ATGACAGACACAGATCCAGATCTTCTACAGTTGTCTGAAGATTTTGAATGTCAGCTGAGTCTATCTAGTG
GGCCTCCCCTTAGCAGACCAGTGTACTCCAAGAAAGGCCTGGAACATAAAAAGGAACTCCAGCAACTTTT
ATTTTCAGTCCCACCAGGATATTTGCGATATACTCCAGAGTCACTCTGGAGGGACCTGATCTCAGAGCAC
AGAGGACTAGAGGAGTTAATAAATAAGCAAATGCAACCTTTCTTTCGGGGAATTTTGATCTTCTCTAGAA
GTTGGGCTGTGGACCTGAACTTGCAGGAGAAGCCAGGAGTCATCTGTGATGCTCTGCTGATAGCACAGAA
CAGCACCCCCATTCTCTACACCATTCTCAGGGAGCAAGATGCAGAGGGCCAGGACTACTGCACTCGCACC
GCCTTTACTTTGAAGCAGAAGCTAGTGAACATGGGGGGCTACACCGGGAAGGTGTGTGTCAGGGCCAAGG
TCCTCTGCCTGAGTCCTGAGAGCAGCGCAGAGGCCTTGGAGGCTGCAGTGTCTCCGATGGATTACCCTGC
GTCCTATAGCCTTGCAGGCACCCAGCACATGGAAGCCCTGCTGCAGTCCCTCGTGATTGTCTTACTCGGC
TTCAGGTCTCTCTTGAGTGACCAGCTCGGCTGTGAGGTTTTAAATCTGCTCACAGCCCAGCAGTATGAGA
TATTCTCCAGAAGCCTCCGCAAGAACAGAGAGTTGTTTGTCCACGGCTTACCTGGCTCAGGGAAGACCAT
CATGGCCATGAAGATCATGGAGAAGATCAGGAATGTGTTTCACTGTGAGGCACACAGAATTCTCTACGTT
TGTGAAAACCAGCCTCTGAGGAACTTTATCAGTGATAGAAATATCTGCCGAGCAGAGACCCGGAAAACTT
TCCTAAGAGAAAACTTTGAACACATTCAACACATCGTCATTGACGAAGCTCAGAATTTCCGTACTGAAGA
TGGGGACTGGTATGGGAAGGCAAAAAGCATCACTCGGAGAGCAAAGGGTGGCCCAGGAATTCTCTGGATC
TTTCTGGATTACTTTCAGACCAGCCACTTGGATTGCAGTGGCCTCCCTCCTCTCTCAGACCAATATCCAA
GAGAAGAGCTCACCAGAATAGTTCGCAATGCAGATCCAATAGCCAAGTACTTACAAAAAGAAATGCAAGT
AATTAGAAGTAATCCTTCATTTAACATCCCCACTGGGTGCCTCGAGGTATTTCCTGAAGCCGAATGGTCC
CAGGGTGTTCAGGGAACCTTACGAATTAAGAAATACTTGACTGTGGAGCAAATAATGACCTGTGTGGCAG
ACACGTGCAGGCGCTTCTTTGATAGGGGCTATTCTCCAAAGGATGTTGCTGTGCTTGTCAGCACCGCAAA
AGAAGTGGAGCACTATAAGTATGAGCTCTTGAAAGCAATGAGGAAGAAAAGGGTGGTGCAGCTCAGTGAT
GCATGTGATATGTTGGGTGATCACATTGTGTTGGACAGTGTTCGGCGATTCTCAGGCCTGGAAAGGAGCA
TAGTGTTTGGGATCCATCCAAGGACAGCTGACCCAGCTATCTTACCCAATGTTCTGATCTGTCTGGCTTC
CAGGGCAAAACAACACCTGTATATTTTTCCGTGGGGTGGCCATTAG

Translation (901 aa):
MEANQCPLVVEPSYPDLVINVGEVTLGEENRKKLQKIQRDQEKERVMRAACALLNSGGGVIRMAKKVEHP
VEMGLDLEQSLRELIQSSDLQAFFETKQQGRCFYIFVKSWSSGPFPEDRSVKPRLCSLSSSLYRRSETSV
RSMDSREAFCFLKTKRKPKILEEGPFHKIHKGVYQELPNSDPADPNSDPADLIFQKDYLEYGEILPFPES
QLVEFKQFSTKHFQEYVKRTIPEYVPAFANTGGGYLFIGVDDKSREVLGCAKENVDPDSLRRKIEQAIYK
LPCVHFCQPQRPITFTLKIVNVLKRGELYGYACMIRVNPFCCAVFSEAPNSWIVEDKYVCSLTTEKWVGM
MTDTDPDLLQLSEDFECQLSLSSGPPLSRPVYSKKGLEHKKELQQLLFSVPPGYLRYTPESLWRDLISEH
RGLEELINKQMQPFFRGILIFSRSWAVDLNLQEKPGVICDALLIAQNSTPILYTILREQDAEGQDYCTRT
AFTLKQKLVNMGGYTGKVCVRAKVLCLSPESSAEALEAAVSPMDYPASYSLAGTQHMEALLQSLVIVLLG
FRSLLSDQLGCEVLNLLTAQQYEIFSRSLRKNRELFVHGLPGSGKTIMAMKIMEKIRNVFHCEAHRILYV
CENQPLRNFISDRNICRAETRKTFLRENFEHIQHIVIDEAQNFRTEDGDWYGKAKSITRRAKGGPGILWI
FLDYFQTSHLDCSGLPPLSDQYPREELTRIVRNADPIAKYLQKEMQVIRSNPSFNIPTGCLEVFPEAEWS
QGVQGTLRIKKYLTVEQIMTCVADTCRRFFDRGYSPKDVAVLVSTAKEVEHYKYELLKAMRKKRVVQLSD
ACDMLGDHIVLDSVRRFSGLERSIVFGIHPRTADPAILPNVLICLASRAKQHLYIFPWGGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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