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Report for CCDS13977.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13977.2 Public Homo sapiens 22 GTPBP1 24 110 108 CCDS HistoryNCBI Gene:9567Re-query CCDS DB by CCDS ID:13977.2Re-query CCDS DB by GeneID:9567See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13977.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216044.10 ENSP00000216044.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216044.10Link to Ensembl Protein Viewer:ENSP00000216044.5Re-query CCDS DB by Nucleotide ID:ENST00000216044Re-query CCDS DB by Protein ID:ENSP00000216044
Original member Current member NCBI NM_004286.5 NP_004277.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004286.5Link to Protein Sequence:NP_004277.2Re-query CCDS DB by Nucleotide ID:NM_004286Re-query CCDS DB by Protein ID:NP_004277Link to BLAST:NP_004277.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004277.2 669 O00178 669 100% 0 0

Chromosomal Locations for CCDS 13977.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 38705956 38706147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38708845 38708956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38715907 38716087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38716652 38717000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38721742 38721865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38724297 38724411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38726006 38726150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38726258 38726440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38727213 38727348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38727983 38728161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38729462 38729662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38730612 38730704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGGCGACGGAGCGCAGTCGCTCCGCGATGGACTCGCCGGTCCCGGCCTCTATGTTCGCCCCCGAGCCCA
GCTCCCCGGGGGCGGCCAGGGCCGCGGCGGCCGCCGCCCGACTCCACGGCGGCTTTGACTCGGACTGCAG
CGAGGACGGCGAGGCGCTCAACGGCGAGCCAGAGCTGGACCTCACCAGCAAGCTGGTTCTAGTGAGCCCT
ACATCAGAGCAGTATGACAGCCTACTTCGGCAGATGTGGGAGAGGATGGACGAGGGATGCGGAGAGACCA
TATATGTCATTGGGCAGGGATCAGATGGGACTGAGTATGGGCTGAGTGAAGCTGACATGGAGGCCTCCTA
CGCCACAGTGAAGAGCATGGCGGAACAGATAGAGGCCGATGTCATCCTTCTGCGGGAACGGCAAGAAGCT
GGGGGCCGCGTGCGTGATTACCTGGTCCGGAAACGAGTAGGAGACAATGACTTCCTGGAGGTCAGGGTAG
CAGTGGTGGGCAACGTGGATGCTGGCAAAAGCACGCTTCTGGGGGTCCTGACACATGGGGAGCTGGACAA
TGGCCGAGGCTTTGCCCGCCAGAAACTCTTCCGCCACAAACATGAAATTGAATCTGGTCGCACCAGCAGT
GTGGGCAACGACATTCTGGGCTTTGACAGTGAAGGCAATGTAGTGAACAAGCCTGACAGCCACGGCGGCA
GCCTGGAGTGGACCAAGATCTGTGAGAAGTCCACGAAAGTCATTACCTTCATCGACTTGGCTGGTCATGA
GAAGTACCTGAAAACCACTGTCTTCGGCATGACAGGCCATCTGCCTGACTTCTGCATGCTCATGGTGGGC
AGCAATGCTGGCATCGTGGGGATGACCAAAGAACACCTGGGCTTGGCACTGGCACTCAATGTACCTGTCT
TTGTGGTAGTCACCAAGATTGACATGTGTCCTGCCAACATCCTGCAAGAAACCCTGAAGCTGTTACAGCG
CCTGCTGAAGTCACCAGGCTGCCGGAAGATCCCCGTGCTGGTGCAGAGCAAAGATGATGTGATTGTCACA
GCCTCCAACTTCAGCTCTGAAAGGATGTGCCCGATATTCCAGATCTCCAACGTTACAGGCGAGAACCTAG
ATCTGCTGAAGATGTTCCTCAACCTCCTCTCCCCCCGCACCAGCTACAGGGAGGAGGAGCCTGCTGAGTT
TCAGATTGATGACACCTACTCCGTCCCGGGTGTGGGGACAGTGGTTTCGGGGACAACACTGAGAGGCCTG
ATCAAGCTGAATGACACGCTGCTGCTGGGCCCAGACCCCTTGGGTAACTTCCTGTCCATTGCTGTCAAAT
CCATCCATCGCAAGCGCATGCCTGTCAAGGAGGTGCGGGGTGGCCAGACAGCATCCTTTGCGCTGAAGAA
GATCAAGCGCTCGTCCATCCGGAAGGGCATGGTGATGGTTTCCCCACGTTTGAATCCCCAAGCCTCCTGG
GAGTTTGAGGCCGAGATTCTCGTCCTCCACCACCCCACCACAATTAGCCCGCGCTACCAGGCCATGGTGC
ACTGTGGGAGCATCAGGCAGACAGCCACCATTCTGAGCATGGACAAGGACTGTCTGCGCACTGGGGACAA
GGCCACTGTACACTTCCGCTTCATCAAGACCCCTGAGTACCTGCACATAGACCAGCGGCTGGTGTTCCGG
GAAGGCCGCACCAAGGCTGTCGGCACCATCACCAAGCTCCTCCAGACCACCAACAACTCCCCAATGAACT
CCAAGCCGCAGCAGATTAAAATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGGGGCCC
GTCTGGTGGGCCAGCAGTAGGAGCACCCCCACCTGGAGATGAAGCCTCCTCTGTAGGGGCAGGGCAACCA
GCTGCGTCCAGCAATCTCCAGCCTCAGCCTAAGCCCAGCAGTGGAGGCCGGCGACGAGGGGGCCAGCGCC
ACAAGGTGAAGTCCCAGGGGGCCTGTGTGACTCCTGCCAGCGGCTGCTGA

Translation (669 aa):
MATERSRSAMDSPVPASMFAPEPSSPGAARAAAAAARLHGGFDSDCSEDGEALNGEPELDLTSKLVLVSP
TSEQYDSLLRQMWERMDEGCGETIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQIEADVILLRERQEA
GGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGFARQKLFRHKHEIESGRTSS
VGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTKVITFIDLAGHEKYLKTTVFGMTGHLPDFCMLMVG
SNAGIVGMTKEHLGLALALNVPVFVVVTKIDMCPANILQETLKLLQRLLKSPGCRKIPVLVQSKDDVIVT
ASNFSSERMCPIFQISNVTGENLDLLKMFLNLLSPRTSYREEEPAEFQIDDTYSVPGVGTVVSGTTLRGL
IKLNDTLLLGPDPLGNFLSIAVKSIHRKRMPVKEVRGGQTASFALKKIKRSSIRKGMVMVSPRLNPQASW
EFEAEILVLHHPTTISPRYQAMVHCGSIRQTATILSMDKDCLRTGDKATVHFRFIKTPEYLHIDQRLVFR
EGRTKAVGTITKLLQTTNNSPMNSKPQQIKMQSTKKGPLTKRDEGGPSGGPAVGAPPPGDEASSVGAGQP
AASSNLQPQPKPSSGGRRRGGQRHKVKSQGACVTPASGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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