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Report for CCDS44182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44182.1 Public Homo sapiens 1 NBPF4 24 110 108 CCDS HistoryNCBI Gene:148545Re-query CCDS DB by CCDS ID:44182.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44182.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415641.8 ENSP00000389237.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000415641.8Link to Ensembl Protein Viewer:ENSP00000389237.2Re-query CCDS DB by Nucleotide ID:ENST00000415641Re-query CCDS DB by Protein ID:ENSP00000389237
Original member Current member NCBI NM_001143989.3 NP_001137461.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001143989.3Link to Protein Sequence:NP_001137461.1Re-query CCDS DB by Nucleotide ID:NM_001143989Re-query CCDS DB by Protein ID:NP_001137461Link to BLAST:NP_001137461.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137461.1 638 Q96M43 638 100% 0 0

Chromosomal Locations for CCDS 44182.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 108223705 108223746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108226679 108226893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108228920 108229156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108232256 108232428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108233160 108233211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108234242 108234411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108235236 108235287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108236270 108236409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108237287 108237338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108238748 108238959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108239828 108239906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108240950 108241164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108242074 108242173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108243584 108243761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGGTGGTATCTGCCGACCCTTTGTCCAGCGAGAGGGCAGAGATGAACATCCTAGAAATCAACCAGGAAT
TGCGCTCGCAGCTGGCAGAGAGCAATCAGCAGTTCCGAGACCTCAAAGAGAAATTCCTTATAACTCAAGC
TACTGCCTACTCCCTGGCCAACCAGCTGAAGAAATACAAGTGTGAAGAGTACAAAGACATCATAGACTCT
GTGCTGAGGGATGAACTGCAGTCCATGGAGAAGCTGGCAGAGAAGCTCAGGCAAGCTGAGGAGCTCAGGC
AGTATAAAGCCCTGGTTCACTCTCAGGCAAAAGAGCTGACCCAGTTACGGGAGAAGTTACGGGAAGGGAG
AGATGCCTCCCGCTGGCTGAACAAGCATCTGAAAACCCTCCTCACTCCTGATGACCCTGACAAGTCCCAG
GGTCAGGACCTCCGAGAGCAGCTGGCTGAGGGGCACAGGCTGGCAGAGCACCTTGTTCACAAGCTGAGCC
CAGAAAATGATGAAGATGAAGATGAGGATGAAGACGACAAAGACGAGGAGGTTGAGAAAGTACAGGAATC
ACCTGCCCCCAGAGAGGTGCAGAAGACTGAAGAAAAGGAAGTCCCTCAGGACTCACTGGAGGAATGTGCT
GTCACTTGTTCAAATAGTCACAACCCTTCTAACTCCAACCAGCCTCACAGGAGCACCAAAATCACATTTA
AGGAACACGAAGTCGACTCTGCTCTGGTTGTAGAGAGTGAACACCCTCATGATGAAGAGGAGGAAGCTCT
AAACATTCCCCCAGAAAATCAAAATGACCATGAGGAGGAGGAGGGGAAAGCGCCAGTGCCCCCCAGACAC
CATGACAAGTCCAACTCTTACCGGCATCGTGAAGTCTCTTTCTTGGCATTGGATGAACAGAAAGTTTGCT
CCGCTCAGGATGTTGCCAGGGATTACTCCAATCCCAAATGGGATGAAACCTCACTTGGCTTCCTCGAAAA
GCAAAGTGATCTTGAAGAGGTGAAAGGACAAGAAACAGTTGCTCCCAGGCTCAGCAGGGGACCGCTGAGA
GTGGACAAGCATGAAATCCCCCAGGAGTCACTGGATGGATGTTGCTTGACTCCTTCCATCCTTCCTGACC
TGACTCCCTCCTACCACCCTTATTGGAGCACTTTGTACTCTTTTGAAGACAAGCAAGTCAGCTTGGCTCT
TGTAGACAAAATTAAAAAGGATCAAGAGGAGATAGAAGACCAAAGCCCACCATGCCCCAGGCTCAGCCAG
GAGCTGCCAGAGGTGAAGGAGCAGGAAGTCCCAGAGGACTCTGTGAATGAAGTTTACTTGACTCCCTCAG
TTCACCATGACGTGTCTGACTGCCACCAGCCTTATAGCAGCACCTTGTCCTCATTGGAGGATCAGCTTGC
CTGCTCTGCTCTGGATGTAGCCTCCCCCACCGAGGCGGCCTGTCCCCAAGGGACTTGGAGTGGAGACTTG
AGCCACCACCAGTCAGAGGTGCAAGTTTCACAGGCACAGCTGGAACCAAGCACCCTGGTGCCCAGTTGTC
TGCGACTACAGCTGGATCAAGGGTTCCACTGTGGGAACGGCTTGGCCCAGCGGGGCCTTTCCTCCACCAC
CTGCAGCTTCTCAGCCAATGCTGATTCTGGGAACCAATGGCCCTTCCAAGAGCTGGTTTTAGAGCCCTCT
CTGGGGATGAAGAACCCTCCCCAGCTGGAAGATGATGCACTTGAAGGCTCAGCAAGCAACACACAAGGGC
GTCAAGTCACTGGCCGGATTCGTGCCTCCCTTGTCCTGATACTGAAGACCATCAGAAGAAGACTCCCGTT
CAGCAAGTGGAGACTGGCATTCAGATTCGCTGGCCCGCATGCTGAGAGCGCAGAGATACCAAATACTGCT
GGAAGGACGCAAAGGATGGCAGGATGA

Translation (638 aa):
MVVSADPLSSERAEMNILEINQELRSQLAESNQQFRDLKEKFLITQATAYSLANQLKKYKCEEYKDIIDS
VLRDELQSMEKLAEKLRQAEELRQYKALVHSQAKELTQLREKLREGRDASRWLNKHLKTLLTPDDPDKSQ
GQDLREQLAEGHRLAEHLVHKLSPENDEDEDEDEDDKDEEVEKVQESPAPREVQKTEEKEVPQDSLEECA
VTCSNSHNPSNSNQPHRSTKITFKEHEVDSALVVESEHPHDEEEEALNIPPENQNDHEEEEGKAPVPPRH
HDKSNSYRHREVSFLALDEQKVCSAQDVARDYSNPKWDETSLGFLEKQSDLEEVKGQETVAPRLSRGPLR
VDKHEIPQESLDGCCLTPSILPDLTPSYHPYWSTLYSFEDKQVSLALVDKIKKDQEEIEDQSPPCPRLSQ
ELPEVKEQEVPEDSVNEVYLTPSVHHDVSDCHQPYSSTLSSLEDQLACSALDVASPTEAACPQGTWSGDL
SHHQSEVQVSQAQLEPSTLVPSCLRLQLDQGFHCGNGLAQRGLSSTTCSFSANADSGNQWPFQELVLEPS
LGMKNPPQLEDDALEGSASNTQGRQVTGRIRASLVLILKTIRRRLPFSKWRLAFRFAGPHAESAEIPNTA
GRTQRMAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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