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Report for CCDS93309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93309.1 Public Homo sapiens 3 MDFIC2 24 110 108 CCDS HistoryNCBI Gene:107986096Re-query CCDS DB by CCDS ID:93309.1Re-query CCDS DB by GeneID:107986096See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93309.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000567252.2 ENSP00000490638.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000567252.2Link to Ensembl Protein Viewer:ENSP00000490638.1Re-query CCDS DB by Nucleotide ID:ENST00000567252Re-query CCDS DB by Protein ID:ENSP00000490638
Original member Current member NCBI NM_001364677.1 NP_001351606.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001364677.1Link to Protein Sequence:NP_001351606.1Re-query CCDS DB by Nucleotide ID:NM_001364677Re-query CCDS DB by Protein ID:NP_001351606Link to BLAST:NP_001351606.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351606.1 189 A0A1B0GVS7-1 189 100% 0 0

Chromosomal Locations for CCDS 93309.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 70196926 70197185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70206569 70206790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70311886 70311973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGTCAGAAACTGAGCTGGAAAAGATAAAAGTAAGAACAGCTGAGCATTTAGAAAATGATAAAAATAACA
TTTCTTGGTTGAAAGAAGATACGCAACTCACGAATGCAAAGCATGCAGATGAGAAACCCATTAATGCTAT
TGTTATAAATTCAGTATCTGACTTCAATATCACAGATGGACCAGCCAAGGAAAACCCCAATGAGAAAAAA
CTGTCAGAATCCAGCACATCACTGTCCTCCCTTGAAGAATGCCAAACAACATTTTCTTACCTCCAAACTG
ATACTTCAGTTCATCACAGAGACACTGATGAGGAGTGTGCCTCCCTTATCCTCGCCTGTCTGTTTTGCCA
GTTTTGGGACTGTCTCCTGATGCTCCCCGGCACCTGCGAAACGGTGTGTACCAAAATGTGCTGCCCCTCT
CGCCGGTATCACCACACCTCGGATGAAAACCACTCTCGGAATGATTGCAGCTGCAATTGTGACATGGACT
GCAGCCTTTTTGAATCTTGCCATGAGACCAGCGAGTGTCTGGAACTGGCCATGGAGATTTCAGAAATCTG
TTACCGCTAG

Translation (189 aa):
MSETELEKIKVRTAEHLENDKNNISWLKEDTQLTNAKHADEKPINAIVINSVSDFNITDGPAKENPNEKK
LSESSTSLSSLEECQTTFSYLQTDTSVHHRDTDEECASLILACLFCQFWDCLLMLPGTCETVCTKMCCPS
RRYHHTSDENHSRNDCSCNCDMDCSLFESCHETSECLELAMEISEICYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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