NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38997.1 Public Mus musculus 4 Acap3 23 108 98 CCDS HistoryNCBI Gene:140500Re-query CCDS DB by CCDS ID:38997.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38997.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105584.9 ENSMUSP00000101209.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105584.9Link to Ensembl Protein Viewer:ENSMUSP00000101209.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105584Re-query CCDS DB by Protein ID:ENSMUSP00000101209
Original member Current member NCBI NM_207223.1 NP_997106.1 Accepted alive Link to Nucleotide Sequence:NM_207223.1Link to Protein Sequence:NP_997106.1Re-query CCDS DB by Nucleotide ID:NM_207223Re-query CCDS DB by Protein ID:NP_997106Link to BLAST:NP_997106.1

Chromosomal Locations for CCDS 38997.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155892395 155892441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155896111 155896168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155896567 155896686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155896884 155896937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155898871 155898929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155899417 155899600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155899959 155900003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155900089 155900184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155900287 155900361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155901004 155901015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155901675 155901787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155901876 155901927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155902132 155902232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155902305 155902416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155902658 155902866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155902960 155903029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155903139 155903233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155903311 155903513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155903751 155903858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155904828 155904926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155905013 155905233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155905410 155905519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155905608 155905718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155905813 155905960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2502 nt):
ATGACGGTAGAGTTCGAGGAATGCATCAAGGACTCGCCGCGCTTCAGGGCAACTATTGATGAGGTAGAAA
CAGATGTGGTTGAGATCGAGGCTAAACTGGACAAGCTGGTCAAACTGTGCAGTGGTATGATTGAAGCCGG
CAAAGCCTACGTCACCACCAACAGGCTCTTTGTGAGCGGTGTCCGAGACCTGTCTCAGCAGTGCCAGGGC
GACACCGTCATCTCGGAATGTCTGCAGAGGTTTGGAGACAGCCTACAGGAGATGGTCAACTATCACACGA
TCCTGTTTGACCAGGCCCAGAGATCGGTGCGGCAGCAGCTCCACAACTTTGTCAAAGAGGATGTGCGGAA
GTTCAAAGAGACAAAGAAGCAGTTTGACAAAGTGCGGGAGGACATGGAGTTGTCCTTGGTGAGGAATGCC
CAAGCCCCAAGGCACCGGCCCCATGAAGTAGAGGAGGCCACAGGTGCCCTCACTGTCACCCGGAAGTGCT
TCCGCCACTTGGCGCTGGACTATGTGCTGCAGATCAATGTCCTCCAGGCCAAGAAGAAGTTTGAAATCTT
AGATTCTATGCTGTCCTTCATGCATGCCCAGTACAGCTTCTTCCAGCAGGGGTATAGCCTCCTACATCAG
CTGGACCCCTACATGAAGAAGCTGGCAGCTGAGTTGGACCAGCTTGTGATCGACTCTGCAGTGGAAAAGC
GAGAGATGGAGCGCAAGCATGCTGCCATCCAGCAACGGACACTCCTGCAGGACTTTTCCTATGATGAACC
CAAAGTGGAGTTTGATGTGGATGCACCAAGTGGTGTGGTAATGGAGGGCTATCTCTTCAAGAGAGCCAGC
AATGCCTTCAAGACATGGAACCGACGGTGGTTCTCCATTCAAAACAGCCAGCTGGTCTACCAGAAGAAAC
TCAAGGATGCACTCACTGTGGTGGTAGATGACCTTCGCCTATGCTCTGTGAAACCATGTGAGGACATTGA
ACGGAGGTTCTGCTTTGAAGTCGTGTCACCTACCAAGAGCTGTATGCTGCAGGCTGACTCGGAGAAGCTG
CGACAGGCTTGGGTTCAAGCTGTGCAGGCTAGCATCGCCTCTGCCTACCGGGAAAGTCCAGATAGCTGCT
ACAGTGAGAGGCTGGACCGTACAGCGTCGCCATCAACAAGTAGCATTGATTCCACCACGGACTCTCGGGA
GCGTGGAGTCAAGGGCGAGAGCGTGCTGCAGCGTGTGCAGAGTGTGGCTGGCAACAGCCAGTGTGGCGAC
TGTGGCCAGCCAGATCCCCGCTGGGCCAGCATCAACTTGGGTGTGCTGCTCTGTATTGAGTGCTCAGGCA
TCCACAGGAGCTTGGGCGTCCACTGCTCTAAGGTACGATCTCTGACACTGGACTCCTGGGAGCCAGAGCT
GCTAAAGCTGATGTGTGAGCTTGGAAACAGCACCGTGAACCAGATCTATGAAGCCCAGTGTGAGGGCCCA
GGCGTTAGGAAACCCACAGCCAGCAGTTCCAGGCAGGACAAAGAGGCATGGATCAAGGACAAATACGTTG
AAAAGAAGTTTCTACGGAAGTTGACTTCTGCACCAGCCCGGGAACCCCCAAGACGCTGGAGGGCACAGAA
GTGCCAGCGCCCTCACAGCTCCCCCCACGCCCCCACTACCCGCCGCAAGGTCCGGCTTGAGCCCGTCCTG
CCCTCCGTTGCTGCTTTGTCCTCAGCTGCTACTATGGAGCGCAAGTTCCGCCGAGACTCCCTCTTCTGCC
CTGATGAGCTGGACTCCCTCTTCTCTTACTTTGATGCAGGGGCTGCTGGGGCTGGTCCACGCAGTCTAAG
CAGTGACAGTGGTCTAGGAGGCAGCTCTGATGGCAGTTCAGATGTTCTTGCCTTCGGCACAGGCTCAGTG
GTGGACAGTGTCACCGAGGAAGAGGGTGCCGAGTCCGAGGAGTCCAGCAGTGAGGTCGATGGAGAAGCAG
AGGCCTGGAGCTTGGCAGATGTGCGTGAGCTGCATCCTGGGCTGCTGGCACATCAGGCAGCTCGTACCCG
TGACCTCCCAGCACTGGCTGCAGCGCTGGCCCATGGAGCTGAAGTCAACTGGGCCGATGCAGCAGATGAG
GGCAAGACCCCATTGGTGCAGGCTGTACTAGGGGGTTCCTTGATTGTCTGTGAGTTCCTTCTGCAAAACG
GAGCTGATGTGAACCAAAGAGACAGCCTTGGCCGGGCCCCCTTGCACCATGCTACACTCTTGGGCCGTAC
CGGCCAGGTCTGTCTGTTCCTGAAGCGGGGGGCTGACCAGCATGCCCTGGACCAGGAGCAACAGGACCCA
CTGACCATCGCAGTTCAAGCAGCGAATGCTGACATTGTCACATTGCTTCGCCTGGCCCGCATGGCTGAGG
AGATGAGAGAAGCTGAGGCGCCCCCTGGTCAGCCGGGACCCCTGCCGGGCAGCAGTCCTACAGAGCTGCA
GTACCGCAGGTGCATCCAGGAGTTCATTGGCCTCCACCTGGAGGAAAGCTAG

Translation (833 aa):
MTVEFEECIKDSPRFRATIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYVTTNRLFVSGVRDLSQQCQG
DTVISECLQRFGDSLQEMVNYHTILFDQAQRSVRQQLHNFVKEDVRKFKETKKQFDKVREDMELSLVRNA
QAPRHRPHEVEEATGALTVTRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYSFFQQGYSLLHQ
LDPYMKKLAAELDQLVIDSAVEKREMERKHAAIQQRTLLQDFSYDEPKVEFDVDAPSGVVMEGYLFKRAS
NAFKTWNRRWFSIQNSQLVYQKKLKDALTVVVDDLRLCSVKPCEDIERRFCFEVVSPTKSCMLQADSEKL
RQAWVQAVQASIASAYRESPDSCYSERLDRTASPSTSSIDSTTDSRERGVKGESVLQRVQSVAGNSQCGD
CGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLTLDSWEPELLKLMCELGNSTVNQIYEAQCEGP
GVRKPTASSSRQDKEAWIKDKYVEKKFLRKLTSAPAREPPRRWRAQKCQRPHSSPHAPTTRRKVRLEPVL
PSVAALSSAATMERKFRRDSLFCPDELDSLFSYFDAGAAGAGPRSLSSDSGLGGSSDGSSDVLAFGTGSV
VDSVTEEEGAESEESSSEVDGEAEAWSLADVRELHPGLLAHQAARTRDLPALAAALAHGAEVNWADAADE
GKTPLVQAVLGGSLIVCEFLLQNGADVNQRDSLGRAPLHHATLLGRTGQVCLFLKRGADQHALDQEQQDP
LTIAVQAANADIVTLLRLARMAEEMREAEAPPGQPGPLPGSSPTELQYRRCIQEFIGLHLEES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH