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Report for CCDS34499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34499.1 Public Homo sapiens 6 PM20D2 24 110 108 CCDS HistoryNCBI Gene:135293Re-query CCDS DB by CCDS ID:34499.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34499.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000275072.5 ENSP00000275072.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000275072.5Link to Ensembl Protein Viewer:ENSP00000275072.4Re-query CCDS DB by Nucleotide ID:ENST00000275072Re-query CCDS DB by Protein ID:ENSP00000275072
Original member Current member NCBI NM_001010853.3 NP_001010853.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010853.3Link to Protein Sequence:NP_001010853.1Re-query CCDS DB by Nucleotide ID:NM_001010853Re-query CCDS DB by Protein ID:NP_001010853Link to BLAST:NP_001010853.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010853.1 436 Q8IYS1 436 100% 0 0

Chromosomal Locations for CCDS 34499.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 89146145 89146609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89149265 89149413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89153043 89153185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89154748 89154902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89158325 89158460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89161783 89161890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89162109 89162263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGAGGCCCGGAGGGGAGCGGCCCGTGGAAGGGGGCGCGTGCAATGGCCGCTCCGAGCTGGAGCTACTGA
AGCTGCGCTCGGCGGAGTGCATCGACGAGGCGGCCGAGCGGCTGGGGGCCCTGAGCCGCGCGATCTGGAG
CCAGCCCGAGCTGGCCTACGAGGAGCACCATGCCCACCGCGTGCTGACGCACTTCTTCGAGCGGGAGCCG
CCCGCGGCCTCCTGGGCAGTGCAGCCGCACTACCAGCTGCCCACGGCCTTCCGCGCCGAGTGGGAGCCGC
CGGAGGCCCGGGCACCGAGCGCCACGCCACGCCCGCTGCACCTGGGCTTCCTCTGCGAGTACGACGCGCT
GCCCGGCATCGGCCACGCCTGCGGCCACAACCTCATCGCTGAGGTCGGGGCGGCGGCCGCGCTGGGCGTG
AGGGGGGCCTTAGAGGGCCTCCCCAGGCCGCCTCCGCCCGTGAAGGTAGTTGTCCTGGGAACCCCTGCAG
AAGAAGATGGTGGTGGCAAAATTGATTTAATTGAAGCAGGGGCTTTTACAAATCTTGATGTTGTTTTTAT
GGCCCACCCATCACAAGAGAATGCTGCTTATCTACCAGATATGGCTGAACATGATGTGACTGTGAAATAC
TATGGAAAAGCATCTCATTCTGCTTCTTATCCCTGGGAAGGATTAAATGCATTAGATGCTGCTGTGCTGG
CCTATAACAATCTGTCTGTGTTCAGACAGCAAATGAAACCAACCTGGAGAGTTCATGGTATAATAAAAAA
TGGTGGTGTAAAACCCAATATCATTCCCTCTTATTCTGAATTAATCTATTACTTCCGTGCACCCTCAATG
AAAGAACTTCAAGTTTTGACCAAAAAGGCAGAAGATTGCTTCAGAGCTGCAGCTTTGGCTTCAGGGTGCA
CAGTGGAAATTAAAGGTGGAGCACATGATTATTACAATGTTCTTCCCAATAAGAGCCTATGGAAAGCCTA
TATGGAAAATGGAAGAAAGCTAGGAATAGAGTTCATTTCAGAAGATACAATGTTGAATGGCCCTTCAGGA
TCTACGGATTTTGGAAATGTTAGTTTTGTGGTTCCTGGAATTCATCCATATTTTCACATTGGATCTAATG
CCTTGAATCATACTGAACAGTACACTGAAGCTGCTGGGTCACAGGAAGCTCAGTTCTACACTCTGCGGAC
GGCCAAAGCTCTGGCAATGACGGCACTGGATGTTATTTTTAAACCAGAGTTACTGGAAGGAATCAGAGAG
GACTTTAAACTGAAACTTCAAGAAGAACAGTTTGTAAATGCAGTAGAATAA

Translation (436 aa):
MRPGGERPVEGGACNGRSELELLKLRSAECIDEAAERLGALSRAIWSQPELAYEEHHAHRVLTHFFEREP
PAASWAVQPHYQLPTAFRAEWEPPEARAPSATPRPLHLGFLCEYDALPGIGHACGHNLIAEVGAAAALGV
RGALEGLPRPPPPVKVVVLGTPAEEDGGGKIDLIEAGAFTNLDVVFMAHPSQENAAYLPDMAEHDVTVKY
YGKASHSASYPWEGLNALDAAVLAYNNLSVFRQQMKPTWRVHGIIKNGGVKPNIIPSYSELIYYFRAPSM
KELQVLTKKAEDCFRAAALASGCTVEIKGGAHDYYNVLPNKSLWKAYMENGRKLGIEFISEDTMLNGPSG
STDFGNVSFVVPGIHPYFHIGSNALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELLEGIRE
DFKLKLQEEQFVNAVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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