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Report for CCDS16555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16555.1 Public Mus musculus 2 Emc7 23 108 98 CCDS HistoryNCBI Gene:73024Re-query CCDS DB by CCDS ID:16555.1Re-query CCDS DB by GeneID:73024See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16555.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069747.5 ENSMUSP00000068610.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069747.5Link to Ensembl Protein Viewer:ENSMUSP00000068610.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000069747Re-query CCDS DB by Protein ID:ENSMUSP00000068610
Original member Current member NCBI NM_133749.2 NP_598510.1 Accepted alive Link to Nucleotide Sequence:NM_133749.2Link to Protein Sequence:NP_598510.1Re-query CCDS DB by Nucleotide ID:NM_133749Re-query CCDS DB by Protein ID:NP_598510Link to BLAST:NP_598510.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598510.1 241 Q9EP72 241 100% 0 0

Chromosomal Locations for CCDS 16555.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112455068 112455300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112459460 112459579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112462801 112462939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112464737 112464817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112466981 112467133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGGCGGGTGCTCTGTGGGGTTTCTTCTCCGTCCTGCTTCTGTTATTATCAGGAGATGCCCACAGCTCGG
AGGTGCCTGGGGCTGCTGCCGAGGGCCCGGGAGGTAGTGGGGTCGGCCTGGGAGATCGTTTTAAGATCGA
GGGACGTGCGGTTGTTCCGGGGGTGAAGCCTCAGGACTGGATCTCCGCGGCCCGAGTGCTGGTAGACGGA
GAAGAGCATGTCGGCTTCCTTAAGACAGATGGGAGCTTTGTGGTTCATGATATTCCCTCTGGCTCTTATG
TAGTGGAAGTTATTTCTCCTGCTTACAAGTTTGACCCTGTCCGAGTCGATATCACTTCAAAAGGAAAAAT
GCGAGCAAGATATGTGAATTACATCAAAACGTCAGAAGTGGTCAGATTACCCTATCCTCTCCAAATGAAA
TCTTCAGGTCCACCTTCTTACTTTATTAAGAGGGAATCGTGGGGCTGGACAGACTTTCTGATGAACCCAA
TGGTTATGATGATGGTTCTCCCGTTATTGATATTTGTGCTTCTGCCTAAAGTGGTGAACACAAGTGATCC
TGACATGAGACGGGAGATGGAGCAGTCAATGAACATGTTGAATTCCAACCATGAATTGCCTGATGTCTCT
GAGTTTATGACCAGACTCTTCTCTTCAAAGTCCTCTGGCAAATCTAGTAGTGGCAGCAGTAAAACAGGCA
AAAGCGGAGCTGGCAAAAGGAGGTAG

Translation (241 aa):
MAGALWGFFSVLLLLLSGDAHSSEVPGAAAEGPGGSGVGLGDRFKIEGRAVVPGVKPQDWISAARVLVDG
EEHVGFLKTDGSFVVHDIPSGSYVVEVISPAYKFDPVRVDITSKGKMRARYVNYIKTSEVVRLPYPLQMK
SSGPPSYFIKRESWGWTDFLMNPMVMMMVLPLLIFVLLPKVVNTSDPDMRREMEQSMNMLNSNHELPDVS
EFMTRLFSSKSSGKSSSGSSKTGKSGAGKRR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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