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Report for CCDS90326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90326.1 Public Mus musculus 7 Katnip 23 108 98 CCDS HistoryNCBI Gene:233865Re-query CCDS DB by CCDS ID:90326.1Re-query CCDS DB by GeneID:233865See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90326.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000124223.7 ENSMUSP00000118668.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124223.7Link to Ensembl Protein Viewer:ENSMUSP00000118668.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000124223Re-query CCDS DB by Protein ID:ENSMUSP00000118668
Original member Current member NCBI NM_001358287.1 NP_001345216.1 Accepted alive Link to Nucleotide Sequence:NM_001358287.1Link to Protein Sequence:NP_001345216.1Re-query CCDS DB by Nucleotide ID:NM_001358287Re-query CCDS DB by Protein ID:NP_001345216Link to BLAST:NP_001345216.1

Chromosomal Locations for CCDS 90326.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 125752988 125753049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125760301 125760470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125761752 125761849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125770572 125770703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125795216 125795480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125797574 125797705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125812780 125812949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125813593 125813658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125814781 125814887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125816579 125816681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125819968 125820183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125829729 125829866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125842580 125843453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125850299 125851003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125851937 125852145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125854560 125854638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125860528 125860705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125865245 125865410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125866326 125866483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125867603 125867667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125868739 125868849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125870643 125870782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125872151 125872252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125872687 125872847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125872932 125873020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125873447 125873505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4755 nt):
ATGGTGACAGACTTTGATGAGAAACATGATGAGTATTTAATATTGCTTCAGCAGAGAAACCGGATACTAA
AGCATTTGAAAGCCAAGGACCCTGTGCAGCTGAGGCTGGAACACTTGGAGCAAGGTTTCTCTGTCTATGT
CAATGGGGCCAACTCGGAGCTGAAGACATCACCACGGAAAGCTGTGCATACAGACTTCTCCAGAAGTGCC
TCACAGGCTGAGGGGTCACAGGATTATGGACGAAGAACCCTATTCCGAGAAGCCGAAGAAGTCTTAAGAC
GCAGCTCCAGGACAGCACCAGGAAAAGTCCAGCGCCGAGGATGGCACCAGAAATCTGTGCAGATCAGAAC
TGAAGCTGGCTCTCGTCTCCACATTGAACCTCCTCTGGACTGTTCAGAAGATTTTGAATCACAAGAAGAT
GTGATTGGCAAGCATGAGGATGCCACTGGGGAGCACACACAGGAGCTGAGAAAAGGCCTGGGGCTCAGCA
CAAGCCTCCAGACCCAAGAGGACGGCTCCAGCGACGAGTACGACTCTATTGAGGAAGACGTCCTCTCTGA
GACGGAGACTGAGGACCCTGTCCTGCCAGTCCACAACAGAGATGAATGTCCACTTCCCAGCCATGATGCA
GTACAGAAGGATGTCCCCAAGGACCAGGAACTGGAAGGCCGGCATCCCCAGGCCACAGACACCCTTGTGG
TAATGGAGTTTAACCCAGCTTCTAAAGGTAATAAGATGGACCGGATTTTATCTGCTAAGCGGAAGGAGAA
TGCTGAGGTCTTCATCCCCAGCAAACCAGACTCTGTCCTGAATCCACAGCCCCCAGCTGTGTTCCCAGAG
CAGGAGAGAGCCTGTTCCAGATCTGGAAGCCGGAGAGATAGACCCTTGTCAGCAACCCGCAAAGCATATG
CAGCTGAGGACCGAGAGGAAGATGCCTCGGCTGTGCTGAAAGCCATCCAGGTGGAGAACGAAGCTCTGCA
ACAGGTCTTCCTCAGCCACGATCCTGAGCTACATACCAGTCCACAGCAGGATACCAAGGAACCACCAGCA
AAATCCTGGTCCAGTCTGCTGAAGGCCAAGGAGGACATCCCTGAGCTGCTTCCTGCTACTCCAGTGACCA
CCGATCCTGAGCTGTGCAGAGCAGCAGCAGGAGCCAAAGCTGTCAGCCAAGCCATGGACGGAATGAGCCC
TTTGGGAAGCAGACAACAGCATAAACTTGTGGGAGTCTTGCAGACTATGGAAAGTGACACTACCCATCTC
AGCCAGGTGGCTATACCAACAGAGAAGCCAGTACCAAATTCAGAGGAAAAGTGGAAAGCAAGAGTAGATG
AGATCGAAGATGCCATCTATGTGACTATGGAAATCCTGTCTAACTGGGGCAATGCATCATGGGTGGGTCT
CACAGAAGTCCAGTTCTTTGATCTGAACAACATAAAGCTTTATGTCTCACCTCATGATGTGGACATCCGG
AATGCAGTGTTGCCAGGCGAACTGGGGTGCCTTGTCAACAGGGACTTAGTGAGCAAGAAGGACCCCCCTG
TGTGGACCTGCCCCTTCCACCCACCACTTCAGCTCTATTTCATTATTCACAACATGCGACAGCTTCGTGA
CTTCGGTCTGACCATGATCAAGGTTCGGAATTACTGGACAGCAGATGGGGATCTTGACATTGGTGCTAAG
AACGTGAAACTCTATGTCAACAAAAGCCTCATCTTTGATGGCGTGTTAGAGAAAGGAGGAGGTGAAGCCC
CTTCTGATTGTACCATCCCCGTGGACCTTCAGAGAGAGAGGAATGAGAGCTCAGACAAGGCCTTGAGCAC
TGGCTGGAAAGAAAGCAAAGGTGCCCTCAAGATGGCTGCCTTGAGTGATGCTAGGGAGCTTGGGCTCAGC
TGCTCACAGCCAGCGGAATCCTTGGATATGACAGTTTCCTCACAAGGAGATTTCCTTGGTGAAAAGGTGA
ATTCTACATCTGGCCTGAAGAACAGTTTGTCCAAGTTACAGGAAGATGTAAGACTGTTGGCAACCCCTGC
CTCTATGGGTGATGGGCCCAGTGTCCCTTCTTCATCCTCTCCTGGGAAATGTCTTCCTCTAGAAGAGGAG
CCCTCTTTGATCCAACAGCTGGAAAGTCTCAGAGGTAGGAAAATCCCCGAACCGACCGGGAAAACCCCAC
ACTGGTTACAGCCTTCTCTAGCAGGGATGGGCAAGAAACAGACAGTCAGGAAGCCCAAACCCCTGTGGCT
CAGTCCTGAAAAAGATCTGGAACAGAAGAGCAGGTTTCCATCTGAGGATGTCATGGGTGATACTCCTGGA
GAGGTGGAGACCAGGGAAAAAGGCCCTCGTCGTGAGCAAGGGAGGACTAGCAGCTGGAATGTCATCACTG
AAGAGAGAGCCCCCAAAGCATTCTCCAAAGCCTGTGGCGATGACTTAGACATCTTTAGCCAGCTTCCTAA
CAGGGATCGCCCTGCTAGTGGGAGGAGGGCCCTGAAGAAGGAAGCCAGCAGTAGCCATGGTGATGACCGG
CCAGCCAGCAAAGAAGACACCCAGGCCTCCCAGACACTGCCTTGGTTGCAGTGGTATGGTGAGCAGGAAC
ACGCACTGCATGCATCATGGGACTCCCTCACTGCCTTCGACCGTGCCCACCGGGGCAGAATCTCTGCCCT
GGAACCACAGGGGGACATCCTAGATGAGTTCCTGAAGCAGCAAAGGAGCAGCCGGCATGAGGAATTCCCA
GCCCCTTGCAGAGAGGAGGAGCCAGAGCCCTCCACAGAGATGGGTGGTGACAGCGACTTTAAAATCCCAG
TCCTCCCTTATGGACAGCACTTGGTTATTGACATCAAGTCTACATGGGGAGACAGACACTATGTTGGCCT
TAACGGCATAGAAATATTCAGCTCCTCAGGGGAACCAGTACAGATTTCCAGCATAACGGCAGACCCCCCT
GACATCAATATTTTACCAGCTTATGGGAAAGACCCACGTGTAGTCTCCAACCTCATTGATGGGGTGAACA
GGACCCAGGATGACATGCATGTCTGGCTGGCCCCCTTCACACCAGGCATGACCCACACCATCTCCATTGA
GTTCACACACCCTTGCCAAGTTGCCCTGATTAGGATTTGGAATTACAATAAGTCTCGAATCCACTCCTTC
CGAGGTGTGAAGGACATCACGATGCTGTTGGATACTCAGTGCATCTTTGAAGGAGAAATTGCCAAAGCCT
CAGGAACTCTGATGGGAGCCCCTGAGCACTTTGGAGACACTATTCTCTTCACCATGGATGAGGACATCCT
GGAGGCCATATTCTGTTTGGATGATACTTTTGACATGGATGCTGAGAGCCTGTGTGGCCTTCAGCCTGAA
GAAGCGCTAAGGAGGCCCAGCACTGCCGACGGTGAAGGTCAGGATGAAAGGCCTTTCACACAGGCTGGCT
TGGGTGCCCAGGACCAGGTACCAGGGCTAGAGCTACAAACCAGCCCCCCTGTCTCTGAAGTCACCACACC
TGAGCCAGGCATCTTCTATGGGTTATGCCTCCGACTAAACTTGACAGCCTCCTGGGGGGACCTGCACTAC
ATAGGACTCACTGGCCTAGAAGTAGTAGGCAAGGACGGCGAGGCCTTGCCCATTCAACCACACCAGCTCT
CTGCCTCTCCCAGGGACTTAAATGACCTGCCCGAGTACAACGATGACTCACGGACCCTGGACAAGTTAAT
CGATGGCATGAACATCACCACCGAGGATGAGCACATGTGGCTGATCCCCTTTTCCCCTGGGTTGGACCAT
GTGGTTATGATCCACTTTGACAGAGCCCAAAGCATTGCTGGCCTGCGTCTCTGGAACTACAATAAATCTC
CCGAGGACACCTACCGAGGGGTCAAAATCGCTCATGTGTCCCTGGATGGCCTGTGCGTGTCTCCTGCAGA
AGGCTTTCTCATCCGAAAGGGGCCTGGCAACTGTCACTTTGATTTTGCACAAGAAATCCTTTTTGGGGAC
TACCTACAGACCCGGCTACCACCAGCACCCACCAGGAGACTAGATGCAAAGAGCCTGGAGCGAGCCAGCA
TGGACTACGAGGCCCCACTCATGCCCTGTGGCTTCATTTTCCAGTTCCAGCTGCTGTCCAGCTGGGGCGA
TCCCTACTACATCGGCCTCACAGGGCTGGAGCTGTATGACGAGCATGGGGAGAGGATCCCATTGTCCCAG
AACAATATTGCTGCCTTCCCAGACAGTGTGAATGCGCTAGAGGGTGTTTGCGGGGATGTGAGAACCCCTG
ACAAGCTTATCGACCAAGTCAACGACACCAGCGATGGCAGGCACATGTGGTTGGCCCCCATCCTGCCTGG
CCTGGTGAACCGAGTGTATGTCATTTTCGACCTGCCCACCACTGTGTCAATGATCAAACTGTGGAATTAC
ACGAAAACGCCTCAACGAGGAGTGAAGGAGTTTGGCCTGCTGGTGGATGACCTGCTTGTGTACAACGGCA
TCCTTGCCATGGTGAGCCACCTGGTTGGGGGCATCCTGCCCACGTGTGAGCCTACCGTGCCCCACCACAC
CATCCTTTTTGCTGAGGACACTGACTTCTGTCACCAGGAGAAACACGCCATCATCAGTAAGCCGGAGGAA
GACCAGGACATACAAATGATGAATGAAAACCAGGTCATCACTACCTCGAGGAGGAAGCCAGGCACTGCTG
ACCCAGCCTTACGCCCTAAAACCTGCATACGTGAGAAGGAGACCTCAAGGCGTTGGCGGTGCTGA

Translation (1584 aa):
MVTDFDEKHDEYLILLQQRNRILKHLKAKDPVQLRLEHLEQGFSVYVNGANSELKTSPRKAVHTDFSRSA
SQAEGSQDYGRRTLFREAEEVLRRSSRTAPGKVQRRGWHQKSVQIRTEAGSRLHIEPPLDCSEDFESQED
VIGKHEDATGEHTQELRKGLGLSTSLQTQEDGSSDEYDSIEEDVLSETETEDPVLPVHNRDECPLPSHDA
VQKDVPKDQELEGRHPQATDTLVVMEFNPASKGNKMDRILSAKRKENAEVFIPSKPDSVLNPQPPAVFPE
QERACSRSGSRRDRPLSATRKAYAAEDREEDASAVLKAIQVENEALQQVFLSHDPELHTSPQQDTKEPPA
KSWSSLLKAKEDIPELLPATPVTTDPELCRAAAGAKAVSQAMDGMSPLGSRQQHKLVGVLQTMESDTTHL
SQVAIPTEKPVPNSEEKWKARVDEIEDAIYVTMEILSNWGNASWVGLTEVQFFDLNNIKLYVSPHDVDIR
NAVLPGELGCLVNRDLVSKKDPPVWTCPFHPPLQLYFIIHNMRQLRDFGLTMIKVRNYWTADGDLDIGAK
NVKLYVNKSLIFDGVLEKGGGEAPSDCTIPVDLQRERNESSDKALSTGWKESKGALKMAALSDARELGLS
CSQPAESLDMTVSSQGDFLGEKVNSTSGLKNSLSKLQEDVRLLATPASMGDGPSVPSSSSPGKCLPLEEE
PSLIQQLESLRGRKIPEPTGKTPHWLQPSLAGMGKKQTVRKPKPLWLSPEKDLEQKSRFPSEDVMGDTPG
EVETREKGPRREQGRTSSWNVITEERAPKAFSKACGDDLDIFSQLPNRDRPASGRRALKKEASSSHGDDR
PASKEDTQASQTLPWLQWYGEQEHALHASWDSLTAFDRAHRGRISALEPQGDILDEFLKQQRSSRHEEFP
APCREEEPEPSTEMGGDSDFKIPVLPYGQHLVIDIKSTWGDRHYVGLNGIEIFSSSGEPVQISSITADPP
DINILPAYGKDPRVVSNLIDGVNRTQDDMHVWLAPFTPGMTHTISIEFTHPCQVALIRIWNYNKSRIHSF
RGVKDITMLLDTQCIFEGEIAKASGTLMGAPEHFGDTILFTMDEDILEAIFCLDDTFDMDAESLCGLQPE
EALRRPSTADGEGQDERPFTQAGLGAQDQVPGLELQTSPPVSEVTTPEPGIFYGLCLRLNLTASWGDLHY
IGLTGLEVVGKDGEALPIQPHQLSASPRDLNDLPEYNDDSRTLDKLIDGMNITTEDEHMWLIPFSPGLDH
VVMIHFDRAQSIAGLRLWNYNKSPEDTYRGVKIAHVSLDGLCVSPAEGFLIRKGPGNCHFDFAQEILFGD
YLQTRLPPAPTRRLDAKSLERASMDYEAPLMPCGFIFQFQLLSSWGDPYYIGLTGLELYDEHGERIPLSQ
NNIAAFPDSVNALEGVCGDVRTPDKLIDQVNDTSDGRHMWLAPILPGLVNRVYVIFDLPTTVSMIKLWNY
TKTPQRGVKEFGLLVDDLLVYNGILAMVSHLVGGILPTCEPTVPHHTILFAEDTDFCHQEKHAIISKPEE
DQDIQMMNENQVITTSRRKPGTADPALRPKTCIREKETSRRWRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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