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Report for CCDS28619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28619.1 Public Mus musculus 17 Cyp4f16 23 108 98 CCDS HistoryNCBI Gene:70101Re-query CCDS DB by CCDS ID:28619.1Re-query CCDS DB by GeneID:70101See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28619.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003416.14 ENSMUSP00000003416.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003416.14Link to Ensembl Protein Viewer:ENSMUSP00000003416.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003416Re-query CCDS DB by Protein ID:ENSMUSP00000003416
Original member Current member EBI ENSMUST00000169591.7 ENSMUSP00000131058.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169591.7Link to Ensembl Protein Viewer:ENSMUSP00000131058.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169591Re-query CCDS DB by Protein ID:ENSMUSP00000131058
Original member Current member NCBI NM_001356303.1 NP_001343232.1 Accepted alive Link to Nucleotide Sequence:NM_001356303.1Link to Protein Sequence:NP_001343232.1Re-query CCDS DB by Nucleotide ID:NM_001356303Re-query CCDS DB by Protein ID:NP_001343232Link to BLAST:NP_001343232.1
Original member Current member NCBI NM_024442.2 NP_077762.1 Accepted alive Link to Nucleotide Sequence:NM_024442.2Link to Protein Sequence:NP_077762.1Re-query CCDS DB by Nucleotide ID:NM_024442Re-query CCDS DB by Protein ID:NP_077762Link to BLAST:NP_077762.1

Chromosomal Locations for CCDS 28619.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 32536999 32537196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32540271 32540415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32542738 32542791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32542877 32543004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32544108 32544229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32544883 32545153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32546369 32546435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32546630 32546759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32550253 32550386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32550503 32550567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32550732 32550814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32551056 32551233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGCTGCGGCTAAGTGTGTCTGGGCTGGACCTGGGCTCTGTGGTGACCTCGTCATGGCATCTTCTGCTGC
TTGGAGTGGCTTCCTGGATTTTGGCCAGAATCCTTGCCTGGACTTACTCATTCTATGAGAACTGCTCCCG
CCTCAGTTGTTTCCCTCAGCCTCCTAAAAAAAACTGGTTTTCAGGTCACTTGGGCATGATCCAGAGCAAT
GAGGAAGGCATGCAGCTGGTTACCGAAATGGGCCAGACTTTCCAAGATGTCCATCTCTTTTGGCTGGGAC
CAGTGATCCCTGTGCTGAGGATTGTTGACCCTGCATTTGTTGCCCCCCTGCTCCAGGCCCCAGCTTTGGT
GGCCCCAAAGGACATGACATTTTTACGCTTCCTGAAGCCCTGGCTGGGGGATGGGCTCTTCCTGAGTTCA
GGTGACAAGTGGAGCCGCCATCGTCGACTGCTGACACCTGCCTTCCACTTTGATATCCTGAAGCCCTATG
TGAAGATTTTTAACCAGAGTGTGAACATCATGCACGCCAAGTGGAAGCACCTATCCTCGGAAGGCAGTGC
ACGTCTGGAAATGTTTGAGCACATCAGCCTCATGACCTTGGACAGTCTGCAGAAATGCCTCTTTGGCTTT
GACAGCAACTGTCAGGAGTCTCCCAGTGAATACATTTCTGCCATCTTGGAACTCAGTTCCCTCATAATAA
AAAGGTCACTTCAGCTCTTCTTGTTCGTTGACTTCCTGTATTACCACACTGCTGATGGGCGGCGCTTCCG
CAAGGCCTGTGACCTGGTGCACAACTTCACAGATGCTGTCATTAGGGAGAGACGGCACACTCTCTCCAGC
CAAAACCATGATGAGTTCTTGAAGTCCAAGACTAAGTCTAAGACTCTGGATTTCATTGATGTTCTCTTGT
TGGCCAAGGATGAACATGGAAAGGAGCTGTCAGATGAGGACATCCGGGCAGAGGCTGACACCTTTATGTT
TGGAGGCCATGACACCACAGCCAGTGCACTCTCCTGGATCCTGTACAACCTGGCGAGGCACCCCGAATAC
CAGGAGCGCTGCCGGCAGGAGGTTCAGGAGCTGCTGAGGGACCGAGAGCCTGAGGAGATTGAATGGGACG
ACCTGGCCCAGCTACCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGGCTACATTCCCCAGTCATAGA
CCTCCTCCGCCGCTGCACCCGGGACATTGTGCTACCTGATGGCCGGGTCATCCCTAAAGGGAACATCTGT
GTCATCAGCATCTTTGGTATTCATCACAATCCATCAGTCTGGCCAGACCCTGAGGTCTATGACCCCTTCC
GCTTTGACCCAGAAAACCCACAGAAGAGGTCCCCTCTGGCTTTTATTCCCTTTTCTGCCGGGCCCAGGAA
CTGCATAGGACAGACTTTCGCCATGAGCGAGATGAAGGTGGCACTGGCGCTGACTCTGCTGCGCTTCCGC
ATCCTGCCTGATGACAAGGAGCCGCGCCGGAAGCCAGAGATAATCCTGCGGGCGGAGGGCGGGTTGTGGC
TGCGGGTGGAGCCTCTGAGCAAGGGCGCTCAGTGA

Translation (524 aa):
MLRLSVSGLDLGSVVTSSWHLLLLGVASWILARILAWTYSFYENCSRLSCFPQPPKKNWFSGHLGMIQSN
EEGMQLVTEMGQTFQDVHLFWLGPVIPVLRIVDPAFVAPLLQAPALVAPKDMTFLRFLKPWLGDGLFLSS
GDKWSRHRRLLTPAFHFDILKPYVKIFNQSVNIMHAKWKHLSSEGSARLEMFEHISLMTLDSLQKCLFGF
DSNCQESPSEYISAILELSSLIIKRSLQLFLFVDFLYYHTADGRRFRKACDLVHNFTDAVIRERRHTLSS
QNHDEFLKSKTKSKTLDFIDVLLLAKDEHGKELSDEDIRAEADTFMFGGHDTTASALSWILYNLARHPEY
QERCRQEVQELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHSPVIDLLRRCTRDIVLPDGRVIPKGNIC
VISIFGIHHNPSVWPDPEVYDPFRFDPENPQKRSPLAFIPFSAGPRNCIGQTFAMSEMKVALALTLLRFR
ILPDDKEPRRKPEIILRAEGGLWLRVEPLSKGAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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