NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27227.1 Public Mus musculus 14 Bnip3l 23 108 98 CCDS HistoryNCBI Gene:12177Re-query CCDS DB by CCDS ID:27227.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27227.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022634.8 ENSMUSP00000022634.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022634.8Link to Ensembl Protein Viewer:ENSMUSP00000022634.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022634Re-query CCDS DB by Protein ID:ENSMUSP00000022634
Original member NCBI NM_009761.3 NP_033891.1 Updated not alive Link to Nucleotide Sequence:NM_009761.3Link to Protein Sequence:NP_033891.1Re-query CCDS DB by Nucleotide ID:NM_009761Re-query CCDS DB by Protein ID:NP_033891
Current member NCBI NM_009761.4 NP_033891.1 Accepted alive Link to Nucleotide Sequence:NM_009761.4Link to Protein Sequence:NP_033891.1Re-query CCDS DB by Nucleotide ID:NM_009761Re-query CCDS DB by Protein ID:NP_033891Link to BLAST:NP_033891.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033891.1 218 Q9Z2F7 218 100% 0 0

Chromosomal Locations for CCDS 27227.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 66987727 66987775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66989135 66989284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66989406 66989509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66993877 66993949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66999521 66999704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67008688 67008784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGTCTCACTTAGTCGAGCCGCCGCCGCCCTTGCACAACAACAACAACAACTGCGAGGAAGGGGAGCAGC
CCCTGCCGCCGCCCGCTGGCCTCAACAGTTCCTGGGTGGAGCTACCCATGAACAGCAGCAATGGCAATGA
GAATGGAAATGGGAAGAATGGGGGGCTGGAGCACGTTCCTTCCTCGTCTTCCATCCACAATGGAGACATG
GAGAAGATCCTCCTGGATGCACAGCATGAGTCGGGACAGAGCAGCTCAAGAGGCAGTTCGCACTGTGACA
GCCCTTCACCACAAGAAGATGGGCAGATCATGTTTGATGTTGAGATGCATACCAGCAGGGACCACAGCTC
TCAGTCAGAAGAAGAAGTTGTAGAAGGAGAAAAGGAAGTTGAGGCTTTGAAGAAAAGTGCAGACTGGGTA
TCAGACTGGTCCAGTAGACCCGAAAACATCCCACCCAAAGAGTTCCATTTCAGACACCCTAAACGTGCTG
CGTCTCTAAGCATGAGGAAGAGTGGAGCCATGAAGAAAGGGGGCATTTTCTCTGCAGAGTTCCTAAAAGT
TTTCATCCCATCTCTCTTCCTTTCTCATGTGCTGGCCTTGGGGCTCGGCATCTATATTGGAAAACGACTG
AGCACACCTTCTGCCAGCACCTACTGA

Translation (218 aa):
MSHLVEPPPPLHNNNNNCEEGEQPLPPPAGLNSSWVELPMNSSNGNENGNGKNGGLEHVPSSSSIHNGDM
EKILLDAQHESGQSSSRGSSHCDSPSPQEDGQIMFDVEMHTSRDHSSQSEEEVVEGEKEVEALKKSADWV
SDWSSRPENIPPKEFHFRHPKRAASLSMRKSGAMKKGGIFSAEFLKVFIPSLFLSHVLALGLGIYIGKRL
STPSASTY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH