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Report for CCDS9056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9056.1 Public Homo sapiens 12 CCDC38 24 110 108 CCDS HistoryNCBI Gene:120935Re-query CCDS DB by CCDS ID:9056.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9056.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344280.8 ENSP00000345470.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344280.8Link to Ensembl Protein Viewer:ENSP00000345470.3Re-query CCDS DB by Nucleotide ID:ENST00000344280Re-query CCDS DB by Protein ID:ENSP00000345470
Original member Current member NCBI NM_182496.3 NP_872302.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182496.3Link to Protein Sequence:NP_872302.2Re-query CCDS DB by Nucleotide ID:NM_182496Re-query CCDS DB by Protein ID:NP_872302Link to BLAST:NP_872302.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872302.2 563 Q502W7 563 100% 0 0

Chromosomal Locations for CCDS 9056.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 95867076 95867189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95869480 95869573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95872255 95872460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95878211 95878346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95879644 95879795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95881485 95881554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95888458 95888506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95890832 95890930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95894989 95895146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95898385 95898465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95898568 95898731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95906387 95906451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95917129 95917294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95918876 95918976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95936473 95936509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGTCCTCAAATTTATTGCCAACACTGAATTCTGGAGGTAAAGTAAAAGATGGCTCAACCAAAGAGGACA
GGCCTTATAAGATCTTTTTCAGAGATCTCTTTCTTGTCAAAGAAAATGAAATGGCAGCAAAGGAAACGGA
AAAATTTATGAACCGTAACATGAAAGTCTACCAGAAAACTACTTTTTCATCCAGAATGAAGAGTCATTCA
TACCTGAGCCAACTAGCTTTCTACCCTAAAAGGAGTGGTAGGTCATTTGAAAAGTTTGGGCCAGGTCCTG
CTCCGATTCCTAGATTAATAGAAGGTTCCGACACAAAAAGGACTGTCCATGAATTTATTAATGACCAGAG
AGACAGGTTTCTGCTCGAGTATGCTTTGTCAACCAAAAGAAACACAATCAAAAAGTTTGAAAAAGACATA
GCAATGAGGGAACGGCAACTAAAAAAAGCAGAGAAAAAGCTCCAAGATGATGCACTGGCCTTTGAAGAGT
TCCTTCGAGAAAATGACCAGAGATCTGTAGACGCTCTGAAAATGGCAGCACAGGAAACAATAAACAAACT
CCAAATGACAGCAGAGCTGAAGAAAGCAAGCATGGAGGTACAAGCAGTGAAAAGTGAAATAGCAAAAACA
GAATTCCTCCTCAGGGAGTATATGAAATATGGTTTTTTTCTGCTGCAAATGTCTCCAAAACATTGGCAAA
TCCAGCAAGCACTAAAAAGAGCACAGGCATCAAAAAGTAAAGCAAATATCATCCTTCCAAAAATATTAGC
AAAATTATCATTACATTCAAGTAACAAGGAAGGCATCCTTGAGGAGTCCGGGAGGACAGCTGTCCTTTCA
GAAGATGCTTCTCAGGGAAGAGACAGCCAAGGAAAGCCAAGCAGAAGCCTGACTCGCACTCCAGAGAAAA
AGAAATCAAACCTGGCTGAAAGTTTCGGTTCAGAAGACAGTTTGGAATTCCTTTTAGATGATGAAATGGA
CGTTGATTTGGAGCCAGCACTTTATTTCAAGGAACCAGAGGAGTTACTTCAAGTCCTCAGAGAGCTGGAA
GAGCAGAATCTTACTTTGTTTCAATATTCCCAAGATGTAGATGAAAATCTTGAAGAGGTAAACAAAAGAG
AAAAAGTTATACAGGATAAAACAAATAGCAACATAGAGTTTCTTTTGGAGCAAGAAAAAATGCTTAAAGC
TAACTGTGTGAGAGAAGAAGAGAAAGCAGCAGAATTGCAATTAAAGTCCAAGCTCTTTAGCTTTGGAGAA
TTTAATTCAGATGCTCAGGAAATACTGATAGACTCACTTAGTAAAAAGATTACTCAAGTATACAAAGTCT
GCATTGGAGATGCTGAGGATGACGGCCTCAACCCAATTCAAAAGCTGGTAAAAGTAGAATCTCGCCTGGT
AGAACTGTGTGACCTCATCGAATCCATTCCCAAAGAAAATGTGGAGGCAATTGAGAGGATGAAACAGAAA
GAATGGCGGCAAAAGTTTCGTGATGAGAAAATGAAAGAAAAACAAAGACACCAACAGGAAAGGCTAAAAG
CTGCTCTGGAAAAAGCAGTAGCACAACCAAAGAAAAAGTTGGGAAGACGACTTGTCTTTCATTCAAAACC
TCCATCTGGTAACAAACAGCAGCTACCTTTAGTCAATGAAACAAAAACAAAATCACAAGAGGAAGAATAT
TTTTTTACTTGA

Translation (563 aa):
MSSNLLPTLNSGGKVKDGSTKEDRPYKIFFRDLFLVKENEMAAKETEKFMNRNMKVYQKTTFSSRMKSHS
YLSQLAFYPKRSGRSFEKFGPGPAPIPRLIEGSDTKRTVHEFINDQRDRFLLEYALSTKRNTIKKFEKDI
AMRERQLKKAEKKLQDDALAFEEFLRENDQRSVDALKMAAQETINKLQMTAELKKASMEVQAVKSEIAKT
EFLLREYMKYGFFLLQMSPKHWQIQQALKRAQASKSKANIILPKILAKLSLHSSNKEGILEESGRTAVLS
EDASQGRDSQGKPSRSLTRTPEKKKSNLAESFGSEDSLEFLLDDEMDVDLEPALYFKEPEELLQVLRELE
EQNLTLFQYSQDVDENLEEVNKREKVIQDKTNSNIEFLLEQEKMLKANCVREEEKAAELQLKSKLFSFGE
FNSDAQEILIDSLSKKITQVYKVCIGDAEDDGLNPIQKLVKVESRLVELCDLIESIPKENVEAIERMKQK
EWRQKFRDEKMKEKQRHQQERLKAALEKAVAQPKKKLGRRLVFHSKPPSGNKQQLPLVNETKTKSQEEEY
FFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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