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Report for CCDS36350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36350.1 Public Mus musculus 11 Arhgap27 23 108 98 CCDS HistoryNCBI Gene:544817Re-query CCDS DB by CCDS ID:36350.1Re-query CCDS DB by GeneID:544817See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 36350.1
This CCDS represents a short variant at the 5' end of a much longer Arhgap27 gene. The protein includes an SH3 domain.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36350.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092557.5 ENSMUSP00000102637.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092557.5Link to Ensembl Protein Viewer:ENSMUSP00000102637.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000092557Re-query CCDS DB by Protein ID:ENSMUSP00000102637
Original member Current member NCBI NM_183288.3 NP_899111.2 Accepted alive Link to Nucleotide Sequence:NM_183288.3Link to Protein Sequence:NP_899111.2Re-query CCDS DB by Nucleotide ID:NM_183288Re-query CCDS DB by Protein ID:NP_899111Link to BLAST:NP_899111.2

Chromosomal Locations for CCDS 36350.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 103360169 103360900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGCGGCGGACGTCGAGGGGGACGTGTACGTGCTGGTGGAACACCCCTTCGAGTACACCGGCAAAGACG
GGCGCCGCATCGCCATCCAACCGAACGAGCGTTACCGACTGCTGCGCCGCAGCACCGAGCACTGGTGGCA
CGTGCGGCGGGAGCCCGGGGGTCGCCCCTTCTACCTCCCCGCGCAGTACGTACGCGAGCTGCCCGCGCTC
GGCGACCCTGCCCCGGCCCCGCAGCCTTCCGTACCGCAGCAGCGCCCCGCAGTCCCGGAACCTCTGGCCT
ACGACTACCGCTTCGTGAGCACCCCGGTGGGCGCCGATGGGTCCTCTGCCGAGCCCCGGGGCCGCGCCAG
CTCCCTGTGTGGCCCTGCACGACAGCGCACCGGTGGCCAGCGCAACAGCCTGGCTCCGGGAGGGCCCGCC
TGCCTTTACGTGCGGCCCGCGGCGCCTGTGCGACCGGCGCAGTCCCTGGATGACTTGGCGCGCGGCGGTA
CCGCGCCCCCTGCCGGCCTCCTCGGCAGCGCGGGCCACTTCAAGGCCTCCAGCGTGGCGGGCTCCTGGGT
TTGTCCCCGGCCCCTGGCGCCTAGCGACTCGGAGAATGTCTACGAGGCCATTCCGGACTTGCGCTGCCCT
CCGCGGGCAGAGAGCCCAAAGCAGGTAGGTCGCTGCGAGCGAGGGGGCCGGAGGGAGGTCACAGTCCAGC
AGAGTCTAGATGCTTTTTTTTTTTTTAACTGA

Translation (243 aa):
MAADVEGDVYVLVEHPFEYTGKDGRRIAIQPNERYRLLRRSTEHWWHVRREPGGRPFYLPAQYVRELPAL
GDPAPAPQPSVPQQRPAVPEPLAYDYRFVSTPVGADGSSAEPRGRASSLCGPARQRTGGQRNSLAPGGPA
CLYVRPAAPVRPAQSLDDLARGGTAPPAGLLGSAGHFKASSVAGSWVCPRPLAPSDSENVYEAIPDLRCP
PRAESPKQVGRCERGGRREVTVQQSLDAFFFFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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