CCDS Report for Consensus CDS

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Report for CCDS19719.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
19719.1	Public	Mus musculus	5	Gtf2ird2	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19719.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000016086.9	ENSMUSP00000016086.3	Accepted	alive
		NCBI	NM_053266.1	NP_444496.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_444496.1	936	Q99NI3	936	100%	0	0

Chromosomal Locations for CCDS 19719.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)

Genome Browser links:

Chromosome	Start	Stop
5	134191185	134191277
5	134192653	134192791
5	134194861	134194977
5	134196422	134196605
5	134197248	134197276
5	134201404	134201458
5	134202239	134202282
5	134203271	134203348
5	134206771	134206827
5	134208880	134208942
5	134211198	134211275
5	134213052	134213135
5	134213967	134214150
5	134214641	134214669
5	134216136	134217712

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2811 nt):
ATGGCCCAAGTAGCAGTGACTACTCAGCCCACTGATGAGCCCTCAGACGGCAGGATGGTGGTGACGTTCC TCATGTCTGCCCTGGAGTCCATGTGTAAAGAGCTGGCCAAGTCCAAGGCCGAGGTGGCCTGCATCGCTGT GTATGAGACAGACGTGTACGTGGTGGGGACGGAGCGGGGCTGTGCCTTTGTCAACGCCAGACAGGATCTC CAGAAAGACTTTGCACAGCACTGCCAGGGGGAAGGGCTGCCTGAAGAGAAGCCACTGTGTCTGGGAAATG GGGAGGCCTGTCCTGGAGAAGCCCAGCTGCTCAGGAGAGCCGTGCAGGACCATTTCTGCCTCTGTTACCG TAAAGCCTTGGGGACAACAGCCATGGTCCCTGTTCCCTACGAGCAGATGCTACAGGATGAGGCAGCTGTG GTGGTTCGGGGCCTTCCGGAAGGCCTGGCCTTCCAGCACCCAGACAATTACAGCCTTGCCACCCTGAAGT GGATCCTGGAGAACAAAGCAGGGATCTCCTTCGCTGTAAAGAGGCCCTTCCTAGGTGCAGAGAGCCAGCT GGGTGGCCTTGGGATGGTGACAGATGCTGGGAGGCCGACAGTACCACCAAATGACAGCTATGGCCCTGTC AGTGTGAAAACTGAACCCATGGAAGATTCTGGCACTTCACCAAGGGCAGCAGCCATGCTAATCAAGACGG AGTCGGAAGATCCTAATTACAACGTGTGTAACGTGCAAGGAAGCCAGCATTTTTCCGCCAGCAGTGACGT CACTGGAATGGAGCTACCATCTGAAGAGTCTACTCGGATGGTCGCTTTAGAGACCAATGAGGACCCCGAG ACTGAGGTAAAAATGGAAGGAAATGCAAGTCCATCCAACCTTGTAAACTCTGCAGCAGGTGTTGAAGACC TTAGGATCATACAGGTGACAGTCGCAGATAATGAGAAGGAGAGGCTCTCAGGCCTCGAAAAAATTAAGCA ACTGCGAGAACAAGTAAACGACCTCTTCAGCCGCAAGTTTGGGGAGGCGATCGGAGTGGACTTCCCCGTG AAGGTTCCCTACAGGAAAATCACCTTCAACCCTGGCTGTGTGGTGATTGATGGCATGCCTCCGGGGGTGG TGTTCAAAGCCCCCGGGTATCTGGAGATCAGCTCCATGAGGAGGATCCTGGATGCTGCAGACTTCATCAA GTTCACGGTCATTAGACCACTTCCTGGACTTGAACTCAGTAATGTGGGGAAACGGAAGATAGACCAGGAG GGCCGCGTGTTTCAAGAAAAGTGGGAGCGAGCCTATTTCTTCGTGGAGGTGCAGAACATCCCCACGTGTT TGATCTGCAAGCAGAGCGTGTCGGTGTCCAAGGAGTACAACCTGCGCCGCCACTACCAGACCAACCACAG CCGGCACTATGACCAGTACTCGGGTCAGGCCCGGGAAGAGAAGCTTAGAGAGCTGAAAAGGGGACTGCGG AAGTATCTCCTGGGGGCCTCGGAGATCGTGTGTCCAGAGCAACCATTCCCCAATGCAAGTCCCCCCACGA ACTCCGCGGTGCAGCCGGCGGAAGAGGTGGCCGGGAGCTTATGGGAGAAGTTAAGACAGAAAATCCGCTC CTTTGTGGCGTACTCCATCGCCATCGATGAGATTACGGATATCAATGACACCACCCAGCTGGCCATCTTC ATCCGCGGCGTCGACGACAACTTCGACGTGTCCGAGGAACTTTTGGACACTGTGCCCATGACAGGCGCCA AATCCGGGAATGAGATATTCCTGCGCGTTGAGAAGAGTCTCAAGAAGTTCAGTATCGATTGGTCCAAGCT GGTGAGCGTGGCCTCCACGGGCACGCCGGCCATGATGGATGCCAACAGCGGGCTGGTGACAAAGCTCAGA GCCAGGGCAGCCTCATGTTGCAAGGGAGCCGACCTCAAATCCGTGCGCTGTATCATTCACCCAGAGTGGC TGTGCGCCCAGAAGTTAAGAATGGGCCACGTCATGGACGTGGTGGTAGACTCGGTGAACTGGATCTGCTC CCGTGGCCTGAACCACGGCGACTTCACGACACTGCTCTACGAGCTGGACAGTCAGTATGGCAGCCTACTG TACCACACGGCCCTCAAATGGCTGGGCCGAGGGCTGGTCCTCAGGAGGTTCTTCGAATCCTTGGAGGAAA TAGACTCGTTTATGTCTTCCCGGGGCAAACCTGTGCCCCAGCTCAGTTCTCGGGACTGGATCCTGGACCT GGCCTTCCTAGTGGACATGACGACGCACCTCAATACACTGGATGCCTCCCTCCAAGGCCATTCACAGATC GTGACCCAGATGTATGACTTCATCCGGGCCTTCCTAGCGAAACTGTGCCTCTGGGAGACGCATCTGGCCA GGAACAACCTGGCCCACTTCCCCACGCTGAAATCGGTTTCCCGGAGTGAAAGCGACGGGCTCAACTACAT CCCTAAGATCGTGGAGCTGAAGGCCGAGTTCCAGAGGCGCCTGTCGGATTTCAAGTCGTGTGAGAGCGAG CTCACCCTGTTCAGCTCCCCGTTTTCCACCACGATCGACAGCGTGCGCGAGGAGCTCCAGATGGAGGTGA TCGACCTGCAGTGCAACACGGTGCTGAGGACCAAGTACGACAAGGTGGGCGTCCCGGACTTCTACAAGCA CCTGTGGAGCAGTTACCCCAAATACAGGAGCCACTGTGCCAGGATGCTGTCCATGTTCAGCAGCACCCAC ATCTGCGAGCAGCTCTTCTCCATCCTGAAGCTGAGCAAGAAAGAGGCGCAGTGGGGCGCAGCACTCCAGG TGGCCACGTGA
Translation (936 aa):
MAQVAVTTQPTDEPSDGRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVYVVGTERGCAFVNARQDL QKDFAQHCQGEGLPEEKPLCLGNGEACPGEAQLLRRAVQDHFCLCYRKALGTTAMVPVPYEQMLQDEAAV VVRGLPEGLAFQHPDNYSLATLKWILENKAGISFAVKRPFLGAESQLGGLGMVTDAGRPTVPPNDSYGPV SVKTEPMEDSGTSPRAAAMLIKTESEDPNYNVCNVQGSQHFSASSDVTGMELPSEESTRMVALETNEDPE TEVKMEGNASPSNLVNSAAGVEDLRIIQVTVADNEKERLSGLEKIKQLREQVNDLFSRKFGEAIGVDFPV KVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILDAADFIKFTVIRPLPGLELSNVGKRKIDQE GRVFQEKWERAYFFVEVQNIPTCLICKQSVSVSKEYNLRRHYQTNHSRHYDQYSGQAREEKLRELKRGLR KYLLGASEIVCPEQPFPNASPPTNSAVQPAEEVAGSLWEKLRQKIRSFVAYSIAIDEITDINDTTQLAIF IRGVDDNFDVSEELLDTVPMTGAKSGNEIFLRVEKSLKKFSIDWSKLVSVASTGTPAMMDANSGLVTKLR ARAASCCKGADLKSVRCIIHPEWLCAQKLRMGHVMDVVVDSVNWICSRGLNHGDFTTLLYELDSQYGSLL YHTALKWLGRGLVLRRFFESLEEIDSFMSSRGKPVPQLSSRDWILDLAFLVDMTTHLNTLDASLQGHSQI VTQMYDFIRAFLAKLCLWETHLARNNLAHFPTLKSVSRSESDGLNYIPKIVELKAEFQRRLSDFKSCESE LTLFSSPFSTTIDSVREELQMEVIDLQCNTVLRTKYDKVGVPDFYKHLWSSYPKYRSHCARMLSMFSSTH ICEQLFSILKLSKKEAQWGAALQVAT

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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