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Report for CCDS86201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86201.1 Public Homo sapiens 11 OR4C5 24 110 108 CCDS HistoryNCBI Gene:79346Re-query CCDS DB by CCDS ID:86201.1Re-query CCDS DB by GeneID:79346See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 86201.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319813.3 ENSP00000321338.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319813.3Link to Ensembl Protein Viewer:ENSP00000321338.3Re-query CCDS DB by Nucleotide ID:ENST00000319813Re-query CCDS DB by Protein ID:ENSP00000321338
Original member Current member NCBI NM_001348223.2 NP_001335152.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001348223.2Link to Protein Sequence:NP_001335152.1Re-query CCDS DB by Nucleotide ID:NM_001348223Re-query CCDS DB by Protein ID:NP_001335152Link to BLAST:NP_001335152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335152.1 326 Q8NGB2 326 100% 0 0

Chromosomal Locations for CCDS 86201.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 48365485 48366465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGTATGTGTCAAATTGCAATCCTTGTGCTATTCACAGAAAAATCAATTATCCAAATACCAAACTGGATT
TCGAGCAAGTGAACAACATAACGGAATTCATCTTGCTTGGCCTGACACAGAACGCAGAGGCACAGAAACT
CTTGTTTGCTGTGTTTACACTCATCTACTTTCTCACCATGGTAGACAACCTAATCATTGTGGTGACAATC
ACCACCAGCCCAGCCCTGGACTCCCCCGTGTATTTTTTTCTGTCTTTCTTTTCCTTCATAGATGGCTGCT
CCTCTTCTACCATGGCCCCCAAAATGATATTTGACTTACTCACTGAAAAGAAAACTATTTCCTTCAGTGG
GTGCATGACCCAGCTCTTTGTAGAACATTTCTTTGGGGGAGTTGAGATCATTCTGCTCGTGGTGATGGCC
TATGACTGCTATGTGGCCATCTGCAAGCCCCTGTACTACCTGATCACAATGAACAGGCAGGTATGTGGCC
TCCTGGTGGCCATGGCATGGGTCGGGGGATTTCTTCACGCTCTGATTCAAATGCTTTTAATAGTCTGGCT
GCCCTTCTGTGGCCCCAATGTCATTGACCATTTCATCTGTGACCTTTTCCCTCTGCTAAAACTCTCCTGC
ACTGACACTCACGTCTTTGGACTCTTTGTTGCCGCCAACAGTGGGCTGATGTGTATGCTCATTTTTTCTA
TTCTTATTACCTCTTACGTCCTAATCCTCTGCTCACAGCGGAAGGCTCTCTCTACCTGCGCCTTCCATAT
CACTGTAGTCGTCCTATTCTTTGTTCCCTGTATATTGGTGTACCTTCGACCCATGATCACCTTCCCTATT
GATAAAGCTGTGTCTGTGTTTTATACTGTGGTAACACCCATGTTAAACCCTTTAATCTACACCCTCAGAA
ACACAGAGGTGAAAAATGCCATGAAGCAGCTCTGGAGCCAAATAATCTGGGGTAACAATTTGTGTGATTA
G

Translation (326 aa):
MYVSNCNPCAIHRKINYPNTKLDFEQVNNITEFILLGLTQNAEAQKLLFAVFTLIYFLTMVDNLIIVVTI
TTSPALDSPVYFFLSFFSFIDGCSSSTMAPKMIFDLLTEKKTISFSGCMTQLFVEHFFGGVEIILLVVMA
YDCYVAICKPLYYLITMNRQVCGLLVAMAWVGGFLHALIQMLLIVWLPFCGPNVIDHFICDLFPLLKLSC
TDTHVFGLFVAANSGLMCMLIFSILITSYVLILCSQRKALSTCAFHITVVVLFFVPCILVYLRPMITFPI
DKAVSVFYTVVTPMLNPLIYTLRNTEVKNAMKQLWSQIIWGNNLCD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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