NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8831.1 Public Homo sapiens 12 KRT71 24 110 108 CCDS HistoryNCBI Gene:112802Re-query CCDS DB by CCDS ID:8831.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8831.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267119.6 ENSP00000267119.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267119.6Link to Ensembl Protein Viewer:ENSP00000267119.5Re-query CCDS DB by Nucleotide ID:ENST00000267119Re-query CCDS DB by Protein ID:ENSP00000267119
Original member Current member NCBI NM_033448.3 NP_258259.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033448.3Link to Protein Sequence:NP_258259.1Re-query CCDS DB by Nucleotide ID:NM_033448Re-query CCDS DB by Protein ID:NP_258259Link to BLAST:NP_258259.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_258259.1 523 Q3SY84 523 100% 0 0

Chromosomal Locations for CCDS 8831.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52544532 52544743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52545565 52545599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52546286 52546506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52547857 52547982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52548152 52548316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52548701 52548796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52549293 52549353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52550029 52550243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52552637 52553077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGAGCCGCCAATTCACCTGCAAGTCGGGAGCTGCCGCCAAGGGGGGCTTCAGTGGCTGCTCAGCTGTGC
TCTCAGGGGGCAGCTCATCCTCCTTCCGGGCAGGGAGCAAAGGGCTCAGTGGGGGCTTTGGCAGCCGGAG
CCTCTACAGCCTGGGGGGTGTCCGGAGCCTCAATGTGGCCAGTGGCAGCGGGAAGAGTGGAGGCTATGGA
TTTGGCCGGGGCCGGGCCAGTGGCTTTGCTGGAAGCATGTTTGGCAGTGTGGCCCTGGGGCCTGTGTGCC
CAACTGTATGCCCACCTGGAGGCATCCACCAGGTTACCGTCAATGAGAGCCTCCTGGCCCCCCTCAACGT
GGAGCTGGACCCCGAGATCCAGAAAGTGCGTGCCCAGGAGCGAGAGCAGATCAAGGCTCTGAACAACAAG
TTCGCCTCCTTCATCGACAAGGTGCGGTTCCTGGAGCAGCAGAACCAGGTACTGGAGACCAAGTGGGAGC
TGCTGCAGCAGCTGGACCTGAACAACTGCAAGAACAACCTGGAGCCCATCCTCGAGGGCTACATCAGCAA
CCTGCGGAAGCAGCTGGAGACGCTGTCTGGGGACAGGGTGAGGCTGGACTCGGAGCTGAGGAATGTGCGG
GACGTAGTGGAGGACTACAAGAAGAGGTATGAGGAGGAAATCAACAAGCGGACAGCAGCAGAGAACGAGT
TTGTGCTGCTCAAGAAGGATGTGGATGCTGCTTACGCCAATAAGGTGGAACTGCAGGCCAAGGTGGAATC
CATGGACCAGGAGATCAAGTTCTTCAGGTGTCTCTTTGAAGCCGAGATCACTCAGATCCAGTCCCACATC
AGTGACATGTCTGTCATCCTGTCCATGGACAACAACCGGAACCTAGACCTGGACAGCATCATTGACGAAG
TCCGCACCCAGTATGAGGAGATTGCCTTGAAGAGTAAGGCCGAGGCTGAGGCCCTGTACCAGACCAAGTT
CCAAGAGCTTCAGCTGGCAGCTGGCAGGCATGGGGACGACCTCAAAAACACCAAGAATGAAATCTCGGAG
CTCACTCGGCTCATCCAGAGAATCCGCTCAGAGATCGAGAACGTGAAGAAGCAGGCTTCCAACCTGGAGA
CAGCCATCGCTGATGCTGAGCAGCGGGGAGACAACGCCCTGAAGGATGCCCGGGCCAAGCTGGACGAGCT
GGAGGGCGCCCTGCACCAGGCCAAGGAGGAGCTGGCGCGGATGCTGCGCGAGTACCAGGAGCTCATGAGC
CTGAAGCTGGCCCTGGACATGGAGATCGCCACCTATCGCAAGCTACTGGAGAGCGAGGAGTGCAGGATGT
CAGGAGAATTTCCCTCCCCTGTCAGCATCTCCATCATCAGCAGCACCAGTGGCGGCAGTGTCTATGGCTT
CCGGCCCAGCATGGTCAGCGGTGGCTATGTGGCCAACAGCAGCAACTGCATCTCTGGAGTGTGCAGCGTG
AGAGGCGGGGAGGGCAGGAGCCGGGGCAGTGCCAACGATTACAAAGACACCCTAGGGAAGGGTTCCAGCC
TGAGTGCACCCTCCAAGAAAACCAGTCGGTAG

Translation (523 aa):
MSRQFTCKSGAAAKGGFSGCSAVLSGGSSSSFRAGSKGLSGGFGSRSLYSLGGVRSLNVASGSGKSGGYG
FGRGRASGFAGSMFGSVALGPVCPTVCPPGGIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNK
FASFIDKVRFLEQQNQVLETKWELLQQLDLNNCKNNLEPILEGYISNLRKQLETLSGDRVRLDSELRNVR
DVVEDYKKRYEEEINKRTAAENEFVLLKKDVDAAYANKVELQAKVESMDQEIKFFRCLFEAEITQIQSHI
SDMSVILSMDNNRNLDLDSIIDEVRTQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTKNEISE
LTRLIQRIRSEIENVKKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQAKEELARMLREYQELMS
LKLALDMEIATYRKLLESEECRMSGEFPSPVSISIISSTSGGSVYGFRPSMVSGGYVANSSNCISGVCSV
RGGEGRSRGSANDYKDTLGKGSSLSAPSKKTSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH