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Report for CCDS27349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27349.1 Public Mus musculus 14 Zic2 23 108 98 CCDS HistoryNCBI Gene:22772Re-query CCDS DB by CCDS ID:27349.1Re-query CCDS DB by GeneID:22772See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27349.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075888.5 ENSMUSP00000075283.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075888.5Link to Ensembl Protein Viewer:ENSMUSP00000075283.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000075888Re-query CCDS DB by Protein ID:ENSMUSP00000075283
Original member Current member NCBI NM_009574.3 NP_033600.3 Accepted alive Link to Nucleotide Sequence:NM_009574.3Link to Protein Sequence:NP_033600.3Re-query CCDS DB by Nucleotide ID:NM_009574Re-query CCDS DB by Protein ID:NP_033600Link to BLAST:NP_033600.3

Chromosomal Locations for CCDS 27349.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 122475676 122476747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122478540 122478703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122478890 122479243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGCTTCTGGACGCGGGGCCGCAGTTCCCGGCCATCGGGGTGGGCAGCTTCGCGCGCCACCACCACCACT
CGGCCGCGGCAGCGGCGGCTGCGGCGGCCGAGATGCAGGACCGCGAGCTGAGCCTGGCGGCAGCTCAGAA
CGGCTTCGTGGACTCGGCCGCGGCGCACATGGGCGCCTTCAAGCTCAACCCCGGGGCACACGAACTGTCT
CCTGGTCAGAGTTCGGCGTTCACGTCGCAAGGTCCGGGTGCTTACCCGGGTTCGGCTGCTGCAGCCGCTG
CGGCCGCGGCTCTAGGGCCCCACGCCGCACACGTTGGCTCCTATTCGGGGCCTCCCTTTAATTCCACCCG
GGACTTCCTGTTCCGCAGCCGGGGCTTCGGGGACTCGGCGCCGGGAGGCGGGCAGCACGGGCTCTTCGGA
CCCGGCGCCGGCGGCCTTCACCACGCGCACTCGGACGCGCAGGGCCACCTTCTTTTCCCTGGCCTCCCGG
AGCAGCACGGGCCGCACGCCTCGCAGAACGTGCTCAATGGGCAAATGCGCCTAGGGCTGCCGGGCGAGGT
GTTCGGGCGCTCGGAGCAATACCGCCAAGTGGCCAGCCCGCGGACCGACCCCTACTCGGCGGCGCAGCTC
CACAACCAGTACGGCCCTATGAATATGAACATGGGGATGAACATGGCAGCGGCCGCAGCCCACCACCACC
ATCACCACCACCACCCTGGTGCCTTTTTCCGCTACATGCGGCAGCAGTGCATCAAGCAAGAGCTCATCTG
CAAGTGGATCGACCCGGAGCAGCTAAGCAATCCCAAGAAAAGCTGCAACAAAACTTTCAGCACCATGCAC
GAGCTGGTGACCCACGTCTCTGTGGAGCACGTCGGCGGCCCGGAACAGAGCAACCACGTCTGCTTCTGGG
AGGAGTGTCCACGCGAGGGCAAACCCTTTAAGGCCAAATACAAACTGGTCAACCACATCCGCGTGCACAC
TGGCGAGAAGCCCTTCCCCTGTCCTTTCCCGGGCTGTGGCAAGGTCTTCGCACGCTCCGAGAACCTCAAG
ATCCACAAAAGAACTCATACAGGGGAGAAACCTTTCCAGTGTGAGTTCGAGGGCTGTGACCGGCGCTTCG
CCAACAGCAGCGACAGGAAGAAGCACATGCATGTCCACACCTCAGATAAGCCCTATCTCTGCAAGATGTG
TGACAAGTCCTACACGCATCCCAGCTCGTTGCGGAAGCACATGAAGGTCCATGAGTCCTCCCCTCAGGGC
TCCGAGTCCTCCCCGGCTGCCAGCTCTGGCTACGAGTCGTCCACACCCCCGGGGTTGGTGTCCCCCAGCG
CAGAGCCACAAAGCAGCTCCAACCTGTCCCCAGCAGCGGCGGCAGCAGCAGCAGCGGCTGCGGCAGCAGC
GGCCGCGGTGTCCGCAGTGCACCGAGGCGCGGGTTCTGGCAGCAGCGGCTCCGGAGGGGGCTCGGCGGCC
GGCAGCGGTGGGGGCGGCGGCGGGGCGGGCGGCGGGGGCGGCGGCAGCTCTGGCGGGGGCAGCGGGACAA
CCGGAGGCCATAGCGGCCTCTCCTCCAACTTCAATGAATGGTACGTGTGA

Translation (529 aa):
MLLDAGPQFPAIGVGSFARHHHHSAAAAAAAAAEMQDRELSLAAAQNGFVDSAAAHMGAFKLNPGAHELS
PGQSSAFTSQGPGAYPGSAAAAAAAAALGPHAAHVGSYSGPPFNSTRDFLFRSRGFGDSAPGGGQHGLFG
PGAGGLHHAHSDAQGHLLFPGLPEQHGPHASQNVLNGQMRLGLPGEVFGRSEQYRQVASPRTDPYSAAQL
HNQYGPMNMNMGMNMAAAAAHHHHHHHHPGAFFRYMRQQCIKQELICKWIDPEQLSNPKKSCNKTFSTMH
ELVTHVSVEHVGGPEQSNHVCFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLK
IHKRTHTGEKPFQCEFEGCDRRFANSSDRKKHMHVHTSDKPYLCKMCDKSYTHPSSLRKHMKVHESSPQG
SESSPAASSGYESSTPPGLVSPSAEPQSSSNLSPAAAAAAAAAAAAAAAVSAVHRGAGSGSSGSGGGSAA
GSGGGGGGAGGGGGGSSGGGSGTTGGHSGLSSNFNEWYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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