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Report for CCDS29765.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29765.1 Public Mus musculus 19 Ifit1bl2 23 108 98 CCDS HistoryNCBI Gene:112419Re-query CCDS DB by CCDS ID:29765.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29765.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087357.4 ENSMUSP00000093816.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087357.4Link to Ensembl Protein Viewer:ENSMUSP00000093816.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000087357Re-query CCDS DB by Protein ID:ENSMUSP00000093816
Original member Current member NCBI NM_001362130.1 NP_001349059.1 Accepted alive Link to Nucleotide Sequence:NM_001362130.1Link to Protein Sequence:NP_001349059.1Re-query CCDS DB by Nucleotide ID:NM_001362130Re-query CCDS DB by Protein ID:NP_001349059Link to BLAST:NP_001349059.1
Original member Current member NCBI NM_053217.3 NP_444447.1 Accepted alive Link to Nucleotide Sequence:NM_053217.3Link to Protein Sequence:NP_444447.1Re-query CCDS DB by Nucleotide ID:NM_053217Re-query CCDS DB by Protein ID:NP_444447Link to BLAST:NP_444447.1

Chromosomal Locations for CCDS 29765.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34618814 34620182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34629728 34629759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGAGCAACTTCTGAGTCCCAGCAACATGAGTGAAGAATCTCATAAAAGTCATATACATGACAGCCTGG
ATGAGCTGAGATGCCACTTTACCTGGGAGCTGGACATAAAAGATAAGCACATCCATGACTTAGAAATCAA
AATCTCAGAGACTGAGTTCCGTGATCCCATCTACAGCATCGGGATGCACAACCTCCTGGCCTACGTGAGG
CACCTGAAAGGCCAGCAGGACGAAGCCCTGCAGAGCTTGAAAGAAGCTGAAGCCTTGATCCAGAGCGAGC
AGCTGAGCAAGAGAAGCCTGGCGACCTGGGGCAACTGTGCCTGGCTGCATTACCACAGGGGCAGCTTGGC
AGAAGCCCAGGTCTACCTGGACAAGGTGGAGAAGGTGTGCAAGGAATTTTCAAGTCCCTTCCGCTACAGG
CTGGAGTGTGCTGAGATGGACTGTGAGGAAGGCTGGGCCTTGCGGAAGTGTGGCTCACAAAATTATACAC
GAGCCATGGCCTGCTTTGAAAGGGCTCTGAAAGTGGAGCCAGAAAACCCTGAGTACAACGCTGGCTATGC
AGATGTAGCCTATCACCTGGATTACTATGATGGTAATTCTCTACAACCCTTAAAGAAGGCTGTCAGTGTA
AAACCAGAAGATCCATACCTTAAAGTTCTCCTTGCCCTAAAGCTGCAGGATTTAAGAAAAACAGATGAAG
CAGAAAAACACATTAAAGAAGCTACGCTCACAATATCCTCCCAGAACAATATCTTTGGATATGTAGCCAA
ATTTTACCGAAGGAAAGGTTGTGTGGAGGAAGCTCTCGGGTTCCTTAAAAAAGCCTTGGAGACAAAACCT
TCCTCTCCTTACTTGCATTTCCAGATTGGCCTTTGCCATAAAACACAATTTTTTCAAATGAAAAAAGCTA
CAAGCAGGGAGAATAGAAAAAGAGCAGACCAATCATGCCATTTGGCTATATGTCATTTTAAAAAGACTTT
AGAGCTGAAACCCACATATGACAGAGCATATATTGATTTGGCTGAGGTGTACGCAAAAAATCATCAACAA
AAAGAGGCAGAGGACAATTTTCAGGAAGTGTTGAGCATGAGTAACTTGGGAGATTATATGCAGCAAGAAA
TTCATTTCCGGTATGGCAACTTCCAACAATACTATAAGAAATCAGAAGAGGCAGCCATCACACATTACTT
AAAAGGCCTGAAAATAGAGGTAACTTCTCACTACAGGGATAAACTTCTCAAGGCTTTGGAGGAACTGGCT
GAAGGACGCAAGGAGGATCATGTCCTGGAAAGCTTGAGCCTCCTTGGGCTCGTCTGCAGACTGAGAGGGG
ACACAAGTGAAGCCATGTCATGTTATGAGAAGGCCCTGAGGCTCACAGGAGCAGTGAACCCTGAGTTTTG
A

Translation (466 aa):
MEQLLSPSNMSEESHKSHIHDSLDELRCHFTWELDIKDKHIHDLEIKISETEFRDPIYSIGMHNLLAYVR
HLKGQQDEALQSLKEAEALIQSEQLSKRSLATWGNCAWLHYHRGSLAEAQVYLDKVEKVCKEFSSPFRYR
LECAEMDCEEGWALRKCGSQNYTRAMACFERALKVEPENPEYNAGYADVAYHLDYYDGNSLQPLKKAVSV
KPEDPYLKVLLALKLQDLRKTDEAEKHIKEATLTISSQNNIFGYVAKFYRRKGCVEEALGFLKKALETKP
SSPYLHFQIGLCHKTQFFQMKKATSRENRKRADQSCHLAICHFKKTLELKPTYDRAYIDLAEVYAKNHQQ
KEAEDNFQEVLSMSNLGDYMQQEIHFRYGNFQQYYKKSEEAAITHYLKGLKIEVTSHYRDKLLKALEELA
EGRKEDHVLESLSLLGLVCRLRGDTSEAMSCYEKALRLTGAVNPEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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