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Report for CCDS38231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38231.1 Public Mus musculus 2 Ap4e1 23 108 98 CCDS HistoryNCBI Gene:108011Re-query CCDS DB by CCDS ID:38231.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38231.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002063.14 ENSMUSP00000002063.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002063.14Link to Ensembl Protein Viewer:ENSMUSP00000002063.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002063Re-query CCDS DB by Protein ID:ENSMUSP00000002063
Original member Current member NCBI NM_175550.3 NP_780759.2 Accepted alive Link to Nucleotide Sequence:NM_175550.3Link to Protein Sequence:NP_780759.2Re-query CCDS DB by Nucleotide ID:NM_175550Re-query CCDS DB by Protein ID:NP_780759Link to BLAST:NP_780759.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780759.2 1122 Q80V94 1122 100% 0 0

Chromosomal Locations for CCDS 38231.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127008754 127008900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127011791 127011862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127014170 127014293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127019286 127019359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127028172 127028293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127033530 127033689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127035044 127035210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127037786 127037859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127043421 127043543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127043647 127043756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127046148 127046287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127046846 127046958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127047043 127047161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127049260 127049562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127052180 127052294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127056181 127056304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127060262 127060520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127061526 127062038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127063270 127063460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127064872 127065029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127066542 127066702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3369 nt):
ATGAGCGACATGGTGGAGAGGACGCTGACCGCACTGCCGGGGCTCTTCCTGCAGAACCAGCTGGGAGGAC
CTGCGGCCTCCAGAGCACCCTTCTTCTCCAGGCTGGGCGGCCTCATCCGTGGCGTCACTGCACTCTCATC
CAAGCACGAAGAAGAGAAATTAATCCAGCAGGAACTGAGTAGTCTGAAGGCAACTGTTTCTGCTCCGACC
ACGACACTGAAAACGATGAAGGAATGTATGGTGAGACTTATATACTGTGAGATGCTTGGATACGATGCTT
CTTTTGGTTATATACATGCAATCAAGTTGGCCCAACAAGGAAACCTCTTAGAAAAAAGAGTGGGTTATTT
GGCTGTTTCTTTATTTCTACATGAAAGTCATGAACTTTTGCTTCTCCTTGTGAATACAGTGGTAAAGGAC
CTGCAGAGCACTAATCTGGTAGAAGTATGTATGGCACTTACTGTTGTCAGCCAGATTTTCCCTCGAGAAA
TGATTCCAGCCGTTCTTCCACTAATAGAAGATAAACTTCAACATTCTAAGGAGATTATACGAAGAAAAGC
AGTTCTGGCATTATACAAATTTTACCTCATTGCCCCCAATCAAGTACAGCACATCCACACTAAATTTCGG
AAAGCGCTTTGTGACAGAGATGTTGGGGTCATGGCTGCCTCTTTGCACATATACCTTAGGATGATTAAGG
AAAATGCTTCTGGCTATAAAGACTTGACGGAGAGTTTTGTAACAATTTTAAAGCAGGTGGTGGGCGGGAA
GCTCCCGGTAGAGTTCAGTTACCACAGCGTGCCAGCACCATGGTTACAGATTCAGCTCCTGAGAATACTG
GGACTGCTGGGGAAAGACGATGAAAGGACAAGTGAATTAATGTATGATGTTCTTGATGAATCCTTACGAA
GAGCCGAGTTAAATCACAATGTCACTTACGCTATTCTGTTTGAATGTGTACACACAATCTATTCTATTTA
TCCTAAGTCAGAATTACTTGAGAAGGCTGCCAAGTGCATTGGAAAATTTGTTCTGTCACCTAAAATAAAC
CTCAAATATTTAGGACTGAAGGCTCTTACCTATGTTATCCAGCAGGATCCTTCTCTGGCTCTTCAACACC
AGATAACCATAATTGAATGCCTAGACCACCCTGATCCCATTATTAAAAGAGAGACTCTGGAACTTCTTTA
CAGAATTACAAATGCACAGAATGTAGTGGTTATTGTACAGAAAATGCTTGAATACTTACATCAGAGCAAA
GAAGAGCATATCATCATCAGTTTAGTTGGCAGAATTGCTGAGCTGGCTGAGAAATATGCTCCTGACAACG
TGTGGTTTATTCAGACAATGAATGCTGTGTTTTCAGTGGGAGGAGATGTAATGCATCCAGATATTCTCAG
CAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAACAGAAGATCAACAATTAAGACTCTACGCA
GTTCAGTCTTATCTTACTTTACTAGATATGGAAAATACTTTCTATCCACAGAGATTTCTTCAAGTTATGA
GTTGGGTGTTAGGAGAGTACTCCTACCTCTTAGATAAAGAAAGTCCAGAGGAGGTTATAACCAGGCTCTA
CAAGTTACTTATGAGTGACTCCATTTCTTCAGAAACGAAAGCATGGTTGTTTGCTGCGGTAACCAAGTTG
ACACCTCAAGCTCATTCTTCTCCCTTAGTTGAGAAATTAATCCAAGAATTCACTGTATCCTTGAATACTT
GTCTGAGACAGCATGCATTTGAATTGAAACATCTGCATGAAAATACAGAGCTTATGAAGAGCCTGCTTCA
GGGTGCTCAGAATTGTGAAGACATAGTGGCAGATGCGTCTTTATCTTTTCTGGATGGTTTTGTGGCTGAA
GGACTCAGTCAGGGAGCAGCACCTTATAAGCCCCATCACCAGCGCCAAGAGGAACAGCTCTCTCAGGAAA
AGGTTCTCAATTTTGAACCATATGGACTATCATTTTCTTCATCTGGCTTCACTGGACGACAGTCTCCGGC
TGGCATTTCCCTGGGCTCTGATATATCTGGAAACAGTGCCGAGACAGGGCTGAAAGAGACAAGCAGTTTG
AAGATGGAAGGGATAAAGAAATTATGGGGTAAAGAGGGCTATCTGCCCAAGAAGGAGAGTGGAACTGGTG
ATAAACCGGAAGCCTCACATGTTCCTGCAGAGGGTGCAACAGTGGAGAATGTAGACCAAGCCACGACCAG
AAAGGACCAAGCTCAAGGCCATATCCCTTCTACAGAGGAGAAAGAAAAGCAGCTGTTGGCATCATCGCTG
TTTGTTGGGCTAGGACCAGAAAATACAGTCGATTTGTTGGGAAAAGCAGATGTTGTGTCTCACAAGTTCA
GGAGGAAATCAAAACTCAAGGTAGCCCAAAGCGACAAGACACCCAGCGCTCCTACTGCTCCCTGCTCCGC
CCTCAGCCTTGGCTCAGATGTGGCTGGTGGGGATGAGGACGGTCTGAGTGCTGTGGATAGAGGGGACGGA
GAACTCAGTTCAGAGCTTTTTCGTTCTGAGTCTCTCTCGGGGCCGCCCTCAGCTGAGAAGCTCGAGAGTG
TCAGCTTGCCTGTGCCTTCTTTATTTGCTGATAACAACATGGAAGTCTTTAATCCCCCTTCATCCTCTGC
AACTTCAACTGTCAAGGAAGAAACTCCTGAGTGCAGGCATTCAGGTCTCGTGGAAATCTGCAGTAATGAA
GCCGTGTCTGTGTCTTCTTACAAAGTCTGGAGGGATGATTGTTTATTGGTGATCTGGGCAGTCACTAGTA
AAACTGACTCAGAGTTCACAGATGCTCAGTTAGAAATTTTTCCTGTGGAAAATTTCAAGATCATTGAGCA
ACCTGAATGTTCTTCTCCTGTGATAGAAACAGAACGCACCAAATCCTTTCAATACAGTGTGCAGATGGAA
AGCCCTTGTATAGAGGGGACTCTCTCTGGTTTTATAAAGTATCAAATGATGGATACGCATTCTGTTCAAC
TGGAATTTTCCATGAACTTACCATTATTAGATTTTATTAGACCATTAAAGATCTCAACTGAAGACTTTGG
CAAACTCTGGTTGTCCTTTGCAAATGATGTGAAGCAAACTATAAAAATATCAGAGCCTGGAGTTGCTCTG
ACTTCTGTCCTAACAGAGCTGCAGCAGAACCTGAGACTTCGTGTGATTGACGTCATAGGCAATGAAGGGC
TGTTGGCCTGTAAGCTGCTCCCATCCACCCCCTGTGTGCTGCACTGCCGAGTACATGCTGACGCGGTAGC
TCTGTGGTTCCGGTCCTCTAGCTCTGTTCTTTCAGACTATTTATCGTGTCACTGTCAAAAAGTGATGCAG
ACATCCTAG

Translation (1122 aa):
MSDMVERTLTALPGLFLQNQLGGPAASRAPFFSRLGGLIRGVTALSSKHEEEKLIQQELSSLKATVSAPT
TTLKTMKECMVRLIYCEMLGYDASFGYIHAIKLAQQGNLLEKRVGYLAVSLFLHESHELLLLLVNTVVKD
LQSTNLVEVCMALTVVSQIFPREMIPAVLPLIEDKLQHSKEIIRRKAVLALYKFYLIAPNQVQHIHTKFR
KALCDRDVGVMAASLHIYLRMIKENASGYKDLTESFVTILKQVVGGKLPVEFSYHSVPAPWLQIQLLRIL
GLLGKDDERTSELMYDVLDESLRRAELNHNVTYAILFECVHTIYSIYPKSELLEKAAKCIGKFVLSPKIN
LKYLGLKALTYVIQQDPSLALQHQITIIECLDHPDPIIKRETLELLYRITNAQNVVVIVQKMLEYLHQSK
EEHIIISLVGRIAELAEKYAPDNVWFIQTMNAVFSVGGDVMHPDILSNFLRLLAEGFDDETEDQQLRLYA
VQSYLTLLDMENTFYPQRFLQVMSWVLGEYSYLLDKESPEEVITRLYKLLMSDSISSETKAWLFAAVTKL
TPQAHSSPLVEKLIQEFTVSLNTCLRQHAFELKHLHENTELMKSLLQGAQNCEDIVADASLSFLDGFVAE
GLSQGAAPYKPHHQRQEEQLSQEKVLNFEPYGLSFSSSGFTGRQSPAGISLGSDISGNSAETGLKETSSL
KMEGIKKLWGKEGYLPKKESGTGDKPEASHVPAEGATVENVDQATTRKDQAQGHIPSTEEKEKQLLASSL
FVGLGPENTVDLLGKADVVSHKFRRKSKLKVAQSDKTPSAPTAPCSALSLGSDVAGGDEDGLSAVDRGDG
ELSSELFRSESLSGPPSAEKLESVSLPVPSLFADNNMEVFNPPSSSATSTVKEETPECRHSGLVEICSNE
AVSVSSYKVWRDDCLLVIWAVTSKTDSEFTDAQLEIFPVENFKIIEQPECSSPVIETERTKSFQYSVQME
SPCIEGTLSGFIKYQMMDTHSVQLEFSMNLPLLDFIRPLKISTEDFGKLWLSFANDVKQTIKISEPGVAL
TSVLTELQQNLRLRVIDVIGNEGLLACKLLPSTPCVLHCRVHADAVALWFRSSSSVLSDYLSCHCQKVMQ
TS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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