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Report for CCDS38195.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38195.1 Public Mus musculus 2 Lgr4 23 108 98 CCDS HistoryNCBI Gene:107515Re-query CCDS DB by CCDS ID:38195.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38195.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046548.13 ENSMUSP00000047325.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046548.13Link to Ensembl Protein Viewer:ENSMUSP00000047325.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046548Re-query CCDS DB by Protein ID:ENSMUSP00000047325
Original member Current member NCBI NM_172671.2 NP_766259.2 Accepted alive Link to Nucleotide Sequence:NM_172671.2Link to Protein Sequence:NP_766259.2Re-query CCDS DB by Nucleotide ID:NM_172671Re-query CCDS DB by Protein ID:NP_766259Link to BLAST:NP_766259.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766259.2 951 A2ARI4-1 951 100% 0 0

Chromosomal Locations for CCDS 38195.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 109918121 109918305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109970692 109970763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109989705 109989776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109991104 109991175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109996554 109996769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109997593 109997664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109999406 109999474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110000296 110000367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110000560 110000631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110000930 110000998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110002466 110002537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110003454 110003519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110004551 110004622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110006504 110006575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110007145 110007270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110008085 110008200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110008582 110008665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110011251 110012527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2856 nt):
ATGCCGGGCCCGCTGCGGCTGCTCTGCTTCTTCGCCCTGGGGCTGCTCGGCTCGGCCGGGCCCAGCGGCG
CGGCGCCACCTCTCTGCGCTGCGCCCTGCAGCTGCGACGGCGACCGTCGGGTGGACTGCTCCGGGAAGGG
GTTGACGGCGGTACCGGAGGGGCTCAGCGCCTTCACCCAAGCACTGGATATCAGTATGAACAATATCACT
CAGTTACCAGAAGATGCATTTAAGAATTTTCCTTTTCTAGAGGAGCTACAACTGGCTGGTAACGACCTTT
CTTTTATCCACCCAAAAGCCTTGTCTGGGTTGAAAGAACTCAAAGTCCTAACCCTCCAGAACAATCAGTT
GAAAACAGTACCCAGTGAAGCCATTCGTGGACTGAGTGCTTTGCAGTCTCTACGCTTAGATGCCAACCAT
ATTACCTCAGTCCCGGAGGACAGTTTTGAAGGGCTCGTTCAGTTGCGGCATCTGTGGCTGGATGACAACA
TCTTGACGGAAGTGCCTGTGCGTCCGCTCAGCAACCTGCCAACCCTGCAGGCGCTGACCTTGGCTCTCAA
CAACATCTCAAGCATCCCCGACTTCGCATTCACCAACCTTTCAAGCTTGGTAGTGCTGCATCTTCATAAC
AATAAAATTAAAAGCCTCAGTCAACACTGTTTTGATGGACTAGATAACCTGGAAACCCTGGACTTGAATT
ATAATAACTTGGATGAATTTCCTCAGGCTATTAAAGCCCTTCCCAGCCTTAAAGAGCTGGGATTTCACAG
TAATTCTATTTCTGTTATCCCGGATGGAGCATTTGCTGGTAATCCACTGCTAAGAACTATCCATTTGTAT
GATAATCCTCTGTCTTTTGTGGGGAACTCAGCATTTCACAACCTGTCTGATCTGCATTCCTTAGTCATTC
GTGGTGCAAGCCTGGTGCAGTGGTTCCCCAATCTGGCCGGAACTGTCCATCTGGAGAGTCTAACCTTGAC
AGGGACAAAAATAAGCAGCATACCTGATGATCTGTGCCAAAACCAAAAGATGCTGCGGACTCTGGACTTA
TCTTATAACGATATAAGAGACCTTCCAAGTTTTAATGGTTGTCGTGCATTGGAAGAAATTTCATTGCAGC
GTAATCAAATCTCCCTGATAAAGGAAACTACTTTTCAAGGCCTAACATCCCTAAGGATTCTAGATCTGAG
TAGAAACCTGATTCGTGAAATTCACAGTGGAGCTTTTGCGAAGCTTGGGACAATTACTAACCTGGATGTG
AGTTTCAATGAATTAACCTCATTTCCTACGGAAGGCCTGAATGGGCTCAATCAACTTAAACTTGTGGGTA
ACTTCCAGCTGAAAGATGCCTTGGCAGCCAGAGACTTTGCCAATCTCAGGTCTCTATCAGTACCATATGC
TTATCAGTGTTGTGCATTTTGGGGGTGTGACTCTTATGCAAATTTAAACACAGAAGATAACAGCCCCCAA
GACCACAGTGTGACAAAAGAGAAAGGTGCTACAGATGCAGCAAATGCCACCAGCACTGCTGAAAGTGAAG
AACATAGCCAAATAATCATCCATTGTACACCTTCAACAGGTGCTTTTAAGCCCTGTGAATATTTACTGGG
AAGCTGGATGATTCGCCTTACAGTGTGGTTCATTTTCCTGGTCGCCTTGCTTTTCAACCTGCTTGTCATT
TTAACAGTGTTTGCGTCTTGTTCATCACTGCCTGCCTCCAAGCTCTTCATAGGCTTGATTTCTGTGTCTA
ACTTACTCATGGGCATCTATACTGGCATCCTTACTTTTCTTGATGCTGTGTCCTGGGGCCGATTTGCTGA
ATTTGGCATTTGGTGGGAAACTGGCAGCGGCTGCAAGGTAGCTGGGTCTCTGGCAGTCTTCTCCTCAGAG
AGCGCCGTATTCCTGTTAACCCTGGCAGCCGTGGAAAGAAGCGTTTTTGCAAAGGATGTAATGAAAAATG
GGAAAAGCAGTCACCTCCGACAGTTCCAGGTGGCTGCCCTCGTAGCTTTGCTGGGTGCTGCAATAGCAGG
CTGCTTCCCCCTTTTTCACGGAGGGCAATATTCTGCATCACCCTTGTGCTTGCCATTTCCTACAGGAGAG
ACACCATCATTAGGATTCACTGTGACCCTAGTGCTATTAAACTCACTAGCATTTTTATTGATGGCCATTA
TCTACACTAAACTCTACTGCAACTTAGAGAAAGAAGACCCGTCAGAAAACTCCCAGTCTAGCATGATTAA
GCACGTTGCTTGGCTCATCTTCACAAACTGCATCTTCTTCTGCCCTGTTGCATTTTTCTCATTCGCACCA
TTGATCACGGCAATCTCCATCAGCCCCGAGATAATGAAGTCTGTTACGCTGATATTCTTCCCGCTGCCTG
CTTGCCTGAATCCAGTCCTGTACGTTTTCTTCAACCCAAAGTTTAAAGACGACTGGAAGCTCCTGAAGCG
GCGTGTCACCAGGAAACACGGATCAGTCTCAGTCTCCATCAGCAGCCAAGGCGGTTGTGGGGAACAGGAT
TTCTACTACGACTGTGGCATGTATTCCCACTTGCAGGGTAACCTGACTGTCTGTGACTGCTGTGAGTCAT
TTCTTCTGACAAAACCAGTATCGTGCAAACACTTAATAAAATCGCACAGTTGTCCTGTATTGACAGTGGC
CTCTTGCCAGAGGCCAGAGGCCTACTGGTCTGATTGTGGCACACAGTCGGCCCATTCTGACTATGCAGAT
GAAGAGGATTCCTTTGTCTCGGACAGCTCTGACCAGGTGCAGGCCTGTGGACGAGCCTGCTTCTACCAGA
GTCGCGGATTCCCTCTGGTGCGCTATGCTTATAATCTACCGAGAGTCAGAGACTGA

Translation (951 aa):
MPGPLRLLCFFALGLLGSAGPSGAAPPLCAAPCSCDGDRRVDCSGKGLTAVPEGLSAFTQALDISMNNIT
QLPEDAFKNFPFLEELQLAGNDLSFIHPKALSGLKELKVLTLQNNQLKTVPSEAIRGLSALQSLRLDANH
ITSVPEDSFEGLVQLRHLWLDDNILTEVPVRPLSNLPTLQALTLALNNISSIPDFAFTNLSSLVVLHLHN
NKIKSLSQHCFDGLDNLETLDLNYNNLDEFPQAIKALPSLKELGFHSNSISVIPDGAFAGNPLLRTIHLY
DNPLSFVGNSAFHNLSDLHSLVIRGASLVQWFPNLAGTVHLESLTLTGTKISSIPDDLCQNQKMLRTLDL
SYNDIRDLPSFNGCRALEEISLQRNQISLIKETTFQGLTSLRILDLSRNLIREIHSGAFAKLGTITNLDV
SFNELTSFPTEGLNGLNQLKLVGNFQLKDALAARDFANLRSLSVPYAYQCCAFWGCDSYANLNTEDNSPQ
DHSVTKEKGATDAANATSTAESEEHSQIIIHCTPSTGAFKPCEYLLGSWMIRLTVWFIFLVALLFNLLVI
LTVFASCSSLPASKLFIGLISVSNLLMGIYTGILTFLDAVSWGRFAEFGIWWETGSGCKVAGSLAVFSSE
SAVFLLTLAAVERSVFAKDVMKNGKSSHLRQFQVAALVALLGAAIAGCFPLFHGGQYSASPLCLPFPTGE
TPSLGFTVTLVLLNSLAFLLMAIIYTKLYCNLEKEDPSENSQSSMIKHVAWLIFTNCIFFCPVAFFSFAP
LITAISISPEIMKSVTLIFFPLPACLNPVLYVFFNPKFKDDWKLLKRRVTRKHGSVSVSISSQGGCGEQD
FYYDCGMYSHLQGNLTVCDCCESFLLTKPVSCKHLIKSHSCPVLTVASCQRPEAYWSDCGTQSAHSDYAD
EEDSFVSDSSDQVQACGRACFYQSRGFPLVRYAYNLPRVRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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