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Report for CCDS50153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50153.1 Public Mus musculus 17 Catsperd 23 108 98 CCDS HistoryNCBI Gene:106757Re-query CCDS DB by CCDS ID:50153.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50153.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112979.3 ENSMUSP00000108603.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112979.3Link to Ensembl Protein Viewer:ENSMUSP00000108603.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112979Re-query CCDS DB by Protein ID:ENSMUSP00000108603
Original member Current member NCBI NM_175350.3 NP_780559.2 Accepted alive Link to Nucleotide Sequence:NM_175350.3Link to Protein Sequence:NP_780559.2Re-query CCDS DB by Nucleotide ID:NM_175350Re-query CCDS DB by Protein ID:NP_780559Link to BLAST:NP_780559.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780559.2 805 E9Q9F6-1 805 100% 0 0

Chromosomal Locations for CCDS 50153.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56628189 56628250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56631536 56631590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56632290 56632366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56633510 56633582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56635490 56635607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56636271 56636335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56641477 56641590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56647728 56647811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56650743 56650893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56651795 56651890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56652457 56652539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56653580 56653756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56654435 56654548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56655097 56655186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56655989 56656047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56658073 56658151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56659529 56659581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56660171 56660245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56661242 56661370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56662662 56662845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56663268 56663425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56664034 56664355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2418 nt):
ATGCTGGTGTTGATGCTAGCAGCAGCAGTGGCCACCATGGTCAGGGCTCACACACTGTGCCGGGTGCACA
CAGTGAGGACCGGGAAAGTGTTTAAGTCCAATATACAACTTCAAGGGGACCCACTGTTCTACGCCTTCCC
CAACACATTTGTGCTCAAGAACGTGTGCAAGGCTGACATTTCTGTGTATCTAGGGCAGAAAGTTTTCTTG
ACGATAGACAACTTTGAGTCCAGCCTCTTGCCGCTCACCGTTCCCAAGTCATTGGCGGTGGGGGTGCCAT
CAATCACAAGCGCCCACTTTGTCTCCGGCTCACTAGTACTGTTTGTGATCAGTGGAAAAGGCTACAGTTA
CGATTACTATGAGAACACCTGGCGTAAATTGGAAGGTATATCAGAACCTGTCTCTCACATTAGTGGTGAC
GTTTGTTGTTTCAAAGGCTCCTTTTGCCTGGAGTTATCAAATAACCTGTTTGCATATCTCCGTGGTGGCC
AGATCCCTGGGACCAACATATATTTCTCTGACAATGGAGGATTTTCATTCCAGCTCATGAATACTGACAA
ACTGAGTCACCTGACAGGAACACTAGGAGGCATCTTCCACTTACATTCCATGTCTCAGGTGGGGGTACTC
ATGGTTGAAAATAATTTGGGCACATTTCATTACATGGAGTACCCCCTGAACCATAGTATGGGGATAGCCT
TTTCATACAAGAATCTCCTTGAAGTCATTATGAAACCATACCAGAGGGGGTTTATGGTCCTCTGGAATCA
GAAAAGTATATTGGTGTCCTCCAATTCAGGCCAGATTGTTGAACACGTGCGGCTGATAGATCAGAAGATC
TTTACAGACTTAGATGTCGAACATGCCAACATCAACATCTACAGTGTTGCCTCAAATGCTTACGAGCTGG
CTTTTTTGGTAGCAGAAGATCATCTGTACTATGGAAGTCAGAGTTACATGGGAACCTATGTAATCAAACT
GCCCCATCAGCCTCTCTGGTCTACACACACAAGCATCTACTTTGAGGACATCGGCATACTGCAGGTCCTC
ACCCCTGTTGCTGACCCACACTTTGCAGCCTATGACTTCGACAAGTGTACAGTGAATGTGCAGTCCTCTC
TCATGGATGAAAAGCTGGCGCTTCAACCATGTAATGTGGAACTTCTGGAAAGCACCATGATAAATACAAT
GTTTACAATAGACATGAATAGCAAGCTGAAACTGTCTGCCCTCATGATACCCCGGAAGGGCGAGAACCCT
ACCCCTCTGGTCATGGTCAGCAATCCCCATGCCCTGGGGTTTAAGGCAAACCTCAATGAGTTTGGCAATA
CGTTTGATGGCAACTCTAAGTACAAACTGGATATTGAACTCAAACAGCAGCATCACTGGGGCAACTCAGA
TTTCAACTTCACTGCCAGCATCAAGCGCCATGCCATCTCCTCTGTAACCGTGGACATAGCTGACAAGACA
CTTTCGTGTGTGGACCTAAAGCCTCTGTCCACGCTCATCTCAGTTGGCTGTGACATGACAAAGAAAATTG
TTGTGCAAAACAAGATCTCCGCCTGCACCATGGGAATCCTGAACCCCGTGCAGCTGCAGAAGAACTATAC
TTACACCATTGAGAAGGAAGCATACGATCCTATCAACCACAATGGTGAAGCCCAGGATGACCTGATAGTA
TTTTACGAGTACAAGGACCTGGGCTGCCCGCGCCTAGTCTACTATGACAAGCCGTGGAAACCTGTGGTGG
AACTGTGGAAGAATGGGATTGTAGAAGAAATCATGAACGCAGAGTATGTCATCTCGGAGATAAATGGACT
AGTCACCTATTCATACTCCTTGACGGCTGCCACTGCAAACTGCCGGTCACAGCCCCAGAACTGGAGCACC
TTTGAATCGGATATTGAGAACGAAGAACCGTTCCTCTGGAACAGAGAGAACTATGTCAGCTGCCACGAAG
ACAACAAGGACAACCCCCTGCTATGGCCGAATGTCGAGTATCAGGTCTTAGGTGGCCAGACAAACAACAA
GATTATTTTTGGCCAAAGAAATGGGATCTATACCTTCCATCTGTCTGTGGTAGATCCATACTACAGCTAC
TGCAACCTGAACACCATATTCAGCGTGTACGTGCACGGGGCCTTACCGGTGACGAAGTTCCAACCATTGC
TCACCATCCTCCTGATGGTCACCACAACGCTGCTGACTGCGTGGCTGGCCTATGCTATCCCCAAACAGCT
GAGGAGTGAGAAAGGCCAGCGACTTCTGGGTTTCTGCTACCAGATACTCCAGCTCTGCCTAGGGGTCTGC
TTCTGCACCTGGCTGCGTGGCAAACTGAGACAGTGGCTGCGCCCCAGAAGGGTGAAAGACCAGAACAGAG
GCAAGGTGCGAGTTGCCCAGAAACATCCAGAGACATAG

Translation (805 aa):
MLVLMLAAAVATMVRAHTLCRVHTVRTGKVFKSNIQLQGDPLFYAFPNTFVLKNVCKADISVYLGQKVFL
TIDNFESSLLPLTVPKSLAVGVPSITSAHFVSGSLVLFVISGKGYSYDYYENTWRKLEGISEPVSHISGD
VCCFKGSFCLELSNNLFAYLRGGQIPGTNIYFSDNGGFSFQLMNTDKLSHLTGTLGGIFHLHSMSQVGVL
MVENNLGTFHYMEYPLNHSMGIAFSYKNLLEVIMKPYQRGFMVLWNQKSILVSSNSGQIVEHVRLIDQKI
FTDLDVEHANINIYSVASNAYELAFLVAEDHLYYGSQSYMGTYVIKLPHQPLWSTHTSIYFEDIGILQVL
TPVADPHFAAYDFDKCTVNVQSSLMDEKLALQPCNVELLESTMINTMFTIDMNSKLKLSALMIPRKGENP
TPLVMVSNPHALGFKANLNEFGNTFDGNSKYKLDIELKQQHHWGNSDFNFTASIKRHAISSVTVDIADKT
LSCVDLKPLSTLISVGCDMTKKIVVQNKISACTMGILNPVQLQKNYTYTIEKEAYDPINHNGEAQDDLIV
FYEYKDLGCPRLVYYDKPWKPVVELWKNGIVEEIMNAEYVISEINGLVTYSYSLTAATANCRSQPQNWST
FESDIENEEPFLWNRENYVSCHEDNKDNPLLWPNVEYQVLGGQTNNKIIFGQRNGIYTFHLSVVDPYYSY
CNLNTIFSVYVHGALPVTKFQPLLTILLMVTTTLLTAWLAYAIPKQLRSEKGQRLLGFCYQILQLCLGVC
FCTWLRGKLRQWLRPRRVKDQNRGKVRVAQKHPET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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