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Report for CCDS59669.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59669.1 Public Mus musculus 5 Speer4c1 23 108 98 CCDS HistoryNCBI Gene:100502967Re-query CCDS DB by CCDS ID:59669.1See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 59669.1
This gene is a member of the Speer gene family described in PMID:12606357. Since there are no full-length transcripts with best hits to this family member, the exon combination of this CCDS is inferred based on partial transcript alignments (e.g., AK006011.1, BB015819.1) and on paralogous transcript alignments.

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 59669.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095005.11 ENSMUSP00000133641.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095005.11Link to Ensembl Protein Viewer:ENSMUSP00000133641.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000095005Re-query CCDS DB by Protein ID:ENSMUSP00000133641
Original member Current member NCBI NM_001281511.1 NP_001268440.1 Accepted alive Link to Nucleotide Sequence:NM_001281511.1Link to Protein Sequence:NP_001268440.1Re-query CCDS DB by Nucleotide ID:NM_001281511Re-query CCDS DB by Protein ID:NP_001268440Link to BLAST:NP_001268440.1

Chromosomal Locations for CCDS 59669.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 15709855 15709998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 15710742 15710925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 15711525 15711668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 15712889 15713048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 15714064 15714202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGGCCTTGTTTGCCCAACTCTGCAGACTTTTTCAGAGAGCCAATGTGGATGGGAGAGAGACCAGAGAGG
GGAGGAAGGATGCTGACCTTCCATCTGAGAGTAATGAAGGACGAAGGAGGTGGACTTGGCGAATGTGGAT
GGCTCTCAGACAGACATCATCCCCTGTACCTGTCATAAGCAAGAAGCAGTTTGAGAAGGAAGAGAAAAAG
CTGATCAAAGAGATCCAGCTCACTACCGAGGAGACAAATGAGCTGAGAGATCGCCTGATCTACGTGACCG
AGGGATCCATGAACAAGAGGCCCTACCACAGGCAAAATCCCCTTTATGAAAAACTGAAGTTAAAGGAGAA
GGAGATCATGACATTTCTACACAACTTAGAGATGGAGAACATGGAGGCCCAAGAGAACAAGCAGGAGCTC
AAGAAGGAGACACATTTCTATCGTAACCTGCACAGCCGGCTCCTGATGGAGGAGAATCTTATAAAGAAGA
AGTCTATGACATTGCAGCAGGAGAGCAAGGAAGTACAGGCTGATTGGGCCATCATTCACCAACGTTTGGT
GGAATTGAACCTGAGTGGTAAAGACGAACAGGAGGAGAACAGCAATCTTGAGACTCCAGAATATCAGGTC
TCAGAAACTGCAAGAGAGCTGGGATTGGCCACAGCTGAAGAAGACAGCATCCTGCAGAATGAGTTGCCAG
GCCAGGAGGCCCCTGCTGAGCACCATCTCCAGCACCCACAATCTTCCTCGGATGAATCTTCTTCCATATA
A

Translation (256 aa):
MALFAQLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKK
LIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQEL
KKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSGKDEQEENSNLETPEYQV
SETARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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