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Report for CCDS21655.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
21655.1 |
Public |
Mus musculus |
7 |
Trim3 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:55992](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:21655.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:55992](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 21655.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000057525.13 |
ENSMUSP00000053384.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000057525.13](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000053384.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000057525](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000053384](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000106789.7 |
ENSMUSP00000102401.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000106789.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000102401.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000106789](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000102401](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000147044.3 |
ENSMUSP00000114822.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000147044.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000114822.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000147044](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000114822](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001285870.1 |
NP_001272799.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001285870.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001272799.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001285870](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001272799](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001272799.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001285871.1 |
NP_001272800.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001285871.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001272800.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001285871](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001272800](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001272800.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_018880.3 |
NP_061368.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_018880.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_061368.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_018880](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_061368](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_061368.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 21655.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2235 nt): ATGGCAAAGAGGGAGGACAGCCCTGGCCCGGAGGTGCAGCCAATGGACAAGCAGTTTCTGGTATGCAGTA TCTGTCTGGATCGGTACCGGTGCCCCAAAGTTCTGCCTTGTCTACATACCTTCTGTGAAAGATGCCTCCA GAACTACATCCCTCCTCAGAGCCTGACACTGTCCTGTCCAGTGTGCCGGCAGACATCCATCCTCCCAGAA CAGGGCGTCTCAGCCCTACAAAACAACTTCTTCATCAGCAGCCTCATGGAGGCCATGCAGCAGGCACCTG AGGGGGCTCATGACCCTGAAGACCCCCACCCCCTCAGCGCAGTGGCTGGCCGCCCTCTCTCCTGCCCCAA CCATGAAGGCAAGACAATGGAGTTTTACTGTGAGGCCTGTGAGACTGCCATGTGTGGTGAGTGCCGCGCA GGGGAGCACCGTGAACACGGCACAGTGCTGTTGCGGGATGTGGTGGAGCAGCACAAGGCAGCTCTGCAGC GCCAGCTTGAGGCTGTGCGTGGCCGATTGCCACAGCTGTCTGCAGCTATCGCCTTGGTTGGGGGTATCAG CCAGCAGCTGCAAGAGCGCAAGGCAGAGGCCCTGGCTCAGATAAGTGCTGCCTTTGAGGACCTGGAGCAA GCTCTGCAGCAGCGCAAGCAGGCTCTGGTCAGCGACTTGGAGAGCATTTGTGGGGCCAAACAGAAGGTGT TGCAGACACAGTTAGACACACTGCGCCAGGGCCAGGAGCACATTGGCAGTAGCTGCAGCTTTGCAGAGCA GGCACTGAGACTGGGCTCTGCCCCTGAGGTTTTGCTAGTAAGAAAGCATATGCGAGAGAGGCTGGCTGCT CTGGCAGCTCAGGCCTTCCCAGAAAGGCCACATGAGAATGCCCAGCTGGAACTGGTCCTTGAAGTGGACG GGTTGCGGAGATCGGTGCTCAACCTGGGGGCACTGCTCACCACCAGTGCTACAGCCCATGAGACAGTGGC CACGGGCGAGGGCCTGCGCCAGGCACTAGTTGGCCAGCCTGCTTCTCTCACTGTCACCACCAAAGACAAA GATGGGCGGCTGGTGCGCACAGGCAGCGCAGAGCTGTGTGCAGAGATCACTGGCCCCGATGGTGTGCGCC TTGCAGTACCGGTGGTGGACCACAAAAATGGCACATACGAGCTGGTGTACACTGCACGCACAGAAGGTGA CCTGCTCCTCTCAGTGCTGCTCTATGGACAGCCGGTGCGTGGCAGCCCTTTTCGTGTGCGTGCCCTTCGA CCTGGGGACCTGCCACCTTCCCCAGATGATGTGAAGCGCCGGGTCAAGTCTCCCGGTGGTCCTGGCAGTC ATGTGCGCCAGAAGGCAGTTCGTAGGCCGAGCTCCATGTACAGCACTGGTGGCAAACGGAAGGACAATCC AATTGAAGACGAACTCGTCTTTCGTGTTGGTAGTCGTGGAAGGGAGAAGGGTGAATTCACCAATTTACAA GGTGTGTCCGCTGCTAGCAGTGGCCGCATCGTGGTAGCAGACAGCAACAACCAATGTATTCAGGTTTTCT CCAATGAGGGCCAGTTCAAGTTCCGATTTGGGGTCCGTGGGCGCTCACCTGGGCAACTACAGCGTCCTAC AGGTGTGGCAGTGGACACCAATGGAGACATTATTGTGGCAGACTATGACAACCGTTGGGTCAGCATCTTC TCTCCTGAAGGCAAGTTCAAGACCAAGATTGGAGCTGGCCGCCTCATGGGACCCAAGGGAGTGGCTGTGG ACCGAAATGGACATATCATTGTGGTGGATAACAAATCTTGCTGTGTCTTCACCTTCCAGCCCAATGGCAA GCTTGTTGGGCGTTTTGGAGGCCGTGGGGCCACTGACCGCCACTTTGCAGGGCCCCACTTTGTGGCTGTG AACAACAAGAATGAGATTGTAGTAACGGATTTCCATAACCATTCAGTGAAGGTGTACAGTGCTGACGGAG AGTTCCTCTTCAAATTTGGCTCGCATGGCGAGGGCAACGGACAGTTCAATGCCCCCACGGGAGTAGCTGT GGATTCCAATGGGAACATCATCGTGGCCGACTGGGGCAACAGCCGCATACAGGTATTCGACAGCTCTGGT TCCTTCCTGTCCTATATCAACACGTCTGCAGAGCCACTATATGGCCCACAGGGCTTGGCATTGACCTCGG ATGGCCACGTGGTAGTGGCTGATGCTGGCAACCACTGCTTTAAGGCCTATCGATACCTCCAGTAG
Translation (744 aa): MAKREDSPGPEVQPMDKQFLVCSICLDRYRCPKVLPCLHTFCERCLQNYIPPQSLTLSCPVCRQTSILPE QGVSALQNNFFISSLMEAMQQAPEGAHDPEDPHPLSAVAGRPLSCPNHEGKTMEFYCEACETAMCGECRA GEHREHGTVLLRDVVEQHKAALQRQLEAVRGRLPQLSAAIALVGGISQQLQERKAEALAQISAAFEDLEQ ALQQRKQALVSDLESICGAKQKVLQTQLDTLRQGQEHIGSSCSFAEQALRLGSAPEVLLVRKHMRERLAA LAAQAFPERPHENAQLELVLEVDGLRRSVLNLGALLTTSATAHETVATGEGLRQALVGQPASLTVTTKDK DGRLVRTGSAELCAEITGPDGVRLAVPVVDHKNGTYELVYTARTEGDLLLSVLLYGQPVRGSPFRVRALR PGDLPPSPDDVKRRVKSPGGPGSHVRQKAVRRPSSMYSTGGKRKDNPIEDELVFRVGSRGREKGEFTNLQ GVSAASSGRIVVADSNNQCIQVFSNEGQFKFRFGVRGRSPGQLQRPTGVAVDTNGDIIVADYDNRWVSIF SPEGKFKTKIGAGRLMGPKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRFGGRGATDRHFAGPHFVAV NNKNEIVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQVFDSSG SFLSYINTSAEPLYGPQGLALTSDGHVVVADAGNHCFKAYRYLQ
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