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Report for CCDS37201.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
37201.1 |
Public |
Mus musculus |
15 |
Tmbim6 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:110213](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:37201.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:110213](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 15 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 37201.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000023749.14 |
ENSMUSP00000023749.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000023749.14](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000023749.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000023749](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000023749](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000160635.7 |
ENSMUSP00000124651.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000160635.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000124651.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000160635](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000124651](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000159209.7 |
ENSMUSP00000125117.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000159209.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000125117.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000159209](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000125117](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000159531.2 |
ENSMUSP00000125318.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000159531.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000125318.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000159531](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000125318](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000161250.7 |
ENSMUSP00000125563.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000161250.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000125563.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000161250](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000125563](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001171034.1 |
NP_001164505.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001171034.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001164505.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001171034](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001164505](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001164505.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001171035.1 |
NP_001164506.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001171035.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001164506.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001171035](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001164506](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001164506.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001171036.1 |
NP_001164507.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001171036.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001164507.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001171036](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001164507](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001164507.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_026669.4 |
NP_080945.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_026669.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_080945.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_026669](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_080945](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_080945.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 37201.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (714 nt): ATGAATATATTTGATCGGAAGATCAACTTTGATGCCCTCTTAAAATTTTCCCACATAACTCCCTCGACAC AGCAGCACCTAAAGAAGGTCTATGCCAGTTTTGCACTATGTATGTTTGTGGCGGCAGCAGGGGCCTATGT CCATGTGGTCACACACTTCATCCAGGCTGGCCTACTCTCCGCCCTGGGCTCCTTGGCCTTGATGATTTGG CTGATGGCAACACCTCACAGCCATGAGACCGAGCAAAAGAGACTGGGACTTCTCGCTGGCTTCGCCTTCC TCACAGGAGTCGGCCTGGGACCTGCCCTGGAGCTGTGCATCGCTGTCAACCCCAGCATCCTCCCCACGGC CTTCATGGGCACGGCCATGATCTTCACCTGCTTCAGCCTGAGCGCCCTGTATGCCCGGCGCCGGAGCTAC CTGTTTTTAGGAGGTATCTTGATGTCAGCCATGAGCCTCATGCTCCTGTCCTCTCTGGGGAACCTTTTCT TTGGCTCCATTTGGCTGTTCCAGGCAAACCTGTACCTGGGACTGCTGGTCATGTGTGGCTTTGTCCTCTT TGATACTCAGCTCATTATTGAGAAGGCTGAACACGGAGATAAGGATTACATCTGGCACTGCGTTGACCTC TTCCTAGATTTCGTTACCCTCTTCAGGAAGCTCATGTTGATCCTGGCCTTCAATGAGAAGGACAAGAAGA AAGAAAAGAAGTGA
Translation (237 aa): MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTHFIQAGLLSALGSLALMIW LMATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAVNPSILPTAFMGTAMIFTCFSLSALYARRRSY LFLGGILMSAMSLMLLSSLGNLFFGSIWLFQANLYLGLLVMCGFVLFDTQLIIEKAEHGDKDYIWHCVDL FLDFVTLFRKLMLILAFNEKDKKKEKK
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