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Report for CCDS2702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2702.1 Public Homo sapiens 3 NKTR 24 110 108 CCDS HistoryNCBI Gene:4820Re-query CCDS DB by CCDS ID:2702.1Re-query CCDS DB by GeneID:4820See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2702.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000232978.13 ENSP00000232978.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000232978.13Link to Ensembl Protein Viewer:ENSP00000232978.8Re-query CCDS DB by Nucleotide ID:ENST00000232978Re-query CCDS DB by Protein ID:ENSP00000232978
Original member Current member NCBI NM_005385.4 NP_005376.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005385.4Link to Protein Sequence:NP_005376.2Re-query CCDS DB by Nucleotide ID:NM_005385Re-query CCDS DB by Protein ID:NP_005376Link to BLAST:NP_005376.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005376.2 1462 P30414 1462 100% 0 0

Chromosomal Locations for CCDS 2702.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 42601007 42601064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42617570 42617644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42619020 42619127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42619664 42619708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42621429 42621516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42630546 42630575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42631171 42631316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42632601 42632823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42633580 42633735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42634613 42634700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42635221 42635366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42636868 42639750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42642501 42642596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42643339 42643395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42643902 42644003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42645888 42645975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4389 nt):
ATGGGGGCGCAGGACCGGCCGCAGTGCCACTTCGACATCGAGATCAACCGGGAGCCGGTTGGTCGCATTA
TG
TTTCAGCTCTTCTCAGACATATGTCCAAAAACATGCAAAAACTTCCTTTGCTTGTGCTCAGGAGAGAA
A
GGCCTTGGGAAAACAACTGGGAAGAAGTTATGTTATAAAGGTTCTACGTTCCATCGTGTGGTTAAAAAC
TTT
ATGATTCAGGGTGGGGACTTCAGTGAAGGTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATATT
TT
AAAGATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTATCAATGGCAAATCGAGGGAAACA
T
ACCAATGGTTCCCAGTTTTTCATTACCACAAAGCCTGCTCCACACCTGGATGGGGTGCATGTAGTCTTT
GGA
CTGGTTATTTCTGGTTTTGAAGTAATCGAACAAATTGAAAATCTGAAGACCGATGCTGCAAGCAGAC
CA
TATGCAGATGTGCGAGTTATTGACTGTGGAGTACTTGCCACAAAATCAATAAAAGATGTTTTTGAGAA
A
AAAAGGAAGAAACCAACTCATTCAGAAGGCTCGGATTCCTCTTCCAATTCCTCCTCTTCTTCAGAATCA
TCT
TCAGAAAGTGAACTTGAACATGAGAGAAGCAGAAGGAGGAAACATAAGAGGAGGCCAAAAGTTAAAC
GT
TCTAAAAAGAGGCGAAAGGAAGCAAGCAGTTCAGAAGAGCCAAGGAATAAACATGCAATGAACCCAAA
A
GGTCACTCTGAGAGGAGTGATACCAATGAAAAAAGGTCAGTTGATTCCAGTGCTAAAAGGGAAAAACCT
GTG
GTCCGCCCAGAAGAGATTCCTCCAGTGCCTGAGAACCGATTTTTACTGAGAAGAGATATGCCTGTTG
TT
ACTGCAGAACCTGAACCGAAGATTCCTGATGTTGCACCCATTGTAAGTGATCAGAAACCATCTGTATC
A
AAGTCTGGACGGAAGATTAAAGGAAGGGGCACAATTCGCTATCACACACCTCCAAGATCAAGATCCTGT
TCT
GAGTCAGATGATGATGACAGCAGTGAAACTCCTCCTCACTGGAAAGAGGAAATGCAGAGATTAAGAG
CA
TATAGACCACCTAGTGGAGAAAAATGGAGTAAAGGAGATAAGTTAAGTGACCCCTGTTCAAGCCGATG
G
GATGAAAGAAGCTTGTCTCAGAGATCCAGATCATGGTCCTATAATGGATATTATTCAGACCTTAGTACA
GCA
AGACACTCTGGCCACCATAAAAAACGCAGAAAAGAAAAAAAGGTTAAGCATAAAAAGAAAGGGAAAA
AG
CAGAAACACTGCAGAAGACACAAACAAACAAAGAAGAGAAGGATTCTTATACCGTCTGACATAGAATC
C
TCAAAATCTTCCACTCGAAGAATGAAATCCTCTTGTGATAGAGAAAGGAGTTCTCGTTCTTCCTCATTG
TCA
TCTCATCACTCATCAAAGAGAGACTGGTCTAAATCTGATAAGGATGTCCAGAGCTCTTTAACCCATT
CC
AGCAGAGACTCATACAGATCAAAATCTCACTCACAGTCTTATTCTAGAGGAAGCTCAAGATCAAGGAC
T
GCGTCAAAGTCCTCATCACATTCTCGAAGTAGATCAAAGTCCAGATCTAGTTCCAAGTCTGGGCACCGA
AAG
AGAGCATCAAAATCACCAAGAAAAACAGCTTCTCAGTTAAGTGAAAATAAACCAGTTAAAACAGAAC
CT
TTAAGAGCAACCATGGCACAAAATGAAAATGTAGTAGTACAACCAGTTGTAGCAGAAAATATTCCTGT
A
ATACCACTGAGTGACAGTCCCCCCCCTTCAAGATGGAAGCCTGGACAGAAACCTTGGAAGCCCTCTTAT
GAG
CGAATTCAGGAAATGAAAGCTAAAACAACCCATTTGCTACCCATCCAAAGCACTTACAGTTTAGCAA
AT
ATTAAAGAGACTGGTAGCTCATCATCCTACCATAAAAGAGAAAAAAATTCGGAAAGTGATCAGAGCAC
T
TATTCAAAATACAGTGATAGAAGTTCAGAAAGCTCACCAAGGTCAAGGAGCAGATCTTCTAGGAGTAGA
TCT
TATTCCAGATCATATACAAGATCACGTAGTCTAGCTAGTTCACATTCAAGGTCTAGGTCTCCATCAT
CT
AGATCTCATTCACGAAATAAATACAGTGATCATTCACAGTGTAGTAGATCATCTTCATATACTTCTAT
T
AGCAGTGATGATGGAAGGCGAGCTAAGAGGAGACTTAGATCCAGTGGGAAAAAAAATAGCGTTTCACAT
AAA
AAGCATAGCAGCAGCTCTGAAAAGACACTTCACAGTAAATATGTCAAAGGTAGAGACAGGTCTTCAT
GT
GTGAGAAAGTATAGCGAGAGCAGATCATCTTTAGATTATTCTTCAGACAGTGAGCAGTCAAGTGTTCA
G
GCCACACAGTCAGCCCAGGAAAAAGAGAAGCAGGGCCAAATGGAAAGAACACATAATAAACAAGAAAAA
AAC
AGAGGTGAAGAAAAATCCAAGTCTGAACGGGAATGCCCTCATTCAAAAAAAAGAACTTTGAAAGAGA
AT
CTTTCTGATCACCTTAGAAATGGCAGTAAGCCCAAAAGGAAGAATTATGCTGGTAGTAAATGGGACTC
T
GAGTCAAATTCAGAACGAGATGTCACTAAAAACAGTAAAAATGACTCCCATCCATCCTCTGACAAGGAA
GAA
GGTGAGGCCACATCCGATTCTGAATCAGAGGTTAGTGAAATTCACATCAAAGTCAAACCCACAACCA
AG
TCGTCCACAAATACTTCACTGCCTGATGATAATGGTGCTTGGAAATCAAGCAAACAGCGCACATCAAC
T
TCTGACTCTGAGGGGTCCTGTTCCAATTCGGAAAACAATAGGGGAAAGCCACAAAAGCACAAACATGGG
TCA
AAGGAAAATCTTAAAAGAGAACACACCAAAAAAGTGAAAGAGAAATTGAAAGGGAAAAAAGACAAAA
AG
CATAAGGCTCCAAAACGAAAGCAAGCATTTCACTGGCAGCCTCCACTAGAATTTGGTGAAGAGGAGGA
G
GAGGAGATTGATGACAAGCAAGTTACTCAGGAATCAAAAGAGAAAAAAGTTTCTGAAAACAATGAAACC
ATA
AAAGATAATATTCTAAAAACTGAGAAATCCAGTGAAGAGGACCTTTCAGGTAAACATGATACAGTGA
CT
GTTTCATCAGATCTTGATCAGTTTACTAAAGATGATAGTAAACTCAGTATTTCTCCCACAGCTTTAAA
T
ACTGAGGAAAATGTGGCCTGTTTACAAAACATTCAGCACGTTGAAGAAAGTGTTCCCAATGGAGTGGAA
GAT
GTGCTTCAAACAGATGACAACATGGAGATCTGCACTCCTGATAGGAGTTCCCCAGCAAAAGTAGAGG
AG
ACTTCCCCTCTAGGAAATGCACGGCTTGATACCCCAGATATAAACATTGTTTTGAAGCAGGATATGGC
A
ACGGAACATCCTCAAGCAGAGGTAGTAAAACAGGAAAGCAGCATGTCCGAAAGTAAAGTGTTGGGTGAA
GTG
GGGAAACAGGACAGCAGCTCTGCTAGCTTGGCTAGTGCTGGAGAAAGTACCGGGAAGAAGGAGGTGG
CT
GAGAAGAGCCAGATCAACCTCATTGATAAGAAATGGAAGCCCCTGCAAGGTGTGGGGAACCTGGCAGC
A
CCTAATGCTGCCACATCCAGTGCTGTGGAAGTTAAGGTGTTGACCACTGTGCCTGAAATGAAACCACAA
GGC
TTGAGAATAGAAATTAAAAGCAAAAATAAAGTTCGGCCTGGGTCTCTCTTTGATGAAGTAAGAAAGA
CA
GCACGCTTAAACCGTAGACCAAGAAATCAGGAGAGTTCAAGTGATGAGCAGACGCCTAGTCGGGATGA
T
GATAGCCAGTCCAGGAGTCCAAGTAGATCTCGAAGTAAATCTGAAACCAAATCAAGACACAGAACAAGG
TCT
GTCTCCTATAGTCACTCAAGAAGTCGATCGAGAAGTTCCACATCATCTTATCGATCAAGAAGCTACT
CT
AGAAGTCGGAGCAGAGGATGGTACAGCAGAGGCCGAACCAGAAGCCGGAGCAGTTCCTACCGGAGTTA
C
AAAAGTCACAGGACGTCCAGCAGGAGCAGATCCAGGAGCAGCTCATATGATCCCCACAGTCGATCCAGG
TCC
TACACCTACGATAGCTACTATAGCAGGAGTCGGAGTCGAAGTAGAAGCCAGAGAAGTGACAGTTACC
AC
CGAGGCAGAAGTTATAATCGGCGGTCCAGGAGTTGTAGATCTTATGGCTCTGACAGTGAAAGTGACCG
A
AGTTACTCTCATCACCGGAGCCCCAGTGAGAGCAGCAGATACAGTTGA


Translation (1462 aa):
MGAQDRPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN
F
MIQGGDFSE
GNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVF
G
LVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATKSIKD
VFEKKRKKPTHSEGSDSSSNSSSSSES
S
SESELEHERSRRRKHKRRPKVKRSKKRRKEASSSEEPRNKHAMNPK
GHSERSDTNEKRSVDSSAKREKP
V
VRPEEIPPVPENRFLLRRDMPVVTAEPE
PKIPDVAPIVSDQKPSVSKSGRKIKGRGTIRYHTPPRSRSC
S
ESDDDDSSETPPHWKEEMQRLRAYRPPSGEKWSKGD
KLSDPCSSRWDERSLSQRSRSWSYNGYYSDLST
A
RHSGHHKKRRKEKKVKHKKKGKKQKHCRRHKQTKKRRILIPSDIESSKSSTRRMKSSCDRERSSRSSSL
S
SHHSSKRDWSKSDKDVQSSLTHSSRDSYRSKSHSQSYSRGSSRSRTASKSSSHSRSRSKSRSSSKSGHR
K
RASKSPRKTASQLSENKPVKTEPLRATMAQNENVVVQPVVAENIPVIPLSDSPPPSRWKPGQKPWKPSY
E
RIQEMKAKTTHLLPIQSTYSLANIKETGSSSSYHKREKNSESDQSTYSKYSDRSSESSPRSRSRSSRSR
S
YSRSYTRSRSLASSHSRSRSPSSRSHSRNKYSDHSQCSRSSSYTSISSDDGRRAKRRLRSSGKKNSVSH
K
KHSSSSEKTLHSKYVKGRDRSSCVRKYSESRSSLDYSSDSEQSSVQATQSAQEKEKQGQMERTHNKQEK
N
RGEEKSKSERECPHSKKRTLKENLSDHLRNGSKPKRKNYAGSKWDSESNSERDVTKNSKNDSHPSSDKE
E
GEATSDSESEVSEIHIKVKPTTKSSTNTSLPDDNGAWKSSKQRTSTSDSEGSCSNSENNRGKPQKHKHG
S
KENLKREHTKKVKEKLKGKKDKKHKAPKRKQAFHWQPPLEFGEEEEEEIDDKQVTQESKEKKVSENNET
I
KDNILKTEKSSEEDLSGKHDTVTVSSDLDQFTKDDSKLSISPTALNTEENVACLQNIQHVEESVPNGVE
D
VLQTDDNMEICTPDRSSPAKVEETSPLGNARLDTPDINIVLKQDMATEHPQAEVVKQESSMSESKVLGE
V
GKQDSSSASLASAGESTGKKEVAEKSQINLIDKKWKPLQGVGNLAAPNAATSSAVEVKVLTTVPEMKPQ
G
LRIEIKSKNKVRPGSLFDEVRKTARLNRRPRNQESSSDEQTPSRDDDSQSRSPSRSRSKSETKSRHRTR
S
VSYSHSRSRSRSSTSSY
RSRSYSRSRSRGWYSRGRTRSRSSSYRSYKSHRTSSRSRSRSSSYDPHSRSR
S
YTYDSYYSRSRSRSRSQRSDSYHRGRSYNRRS
RSCRSYGSDSESDRSYSHHRSPSESSRYS



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser