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Report for CCDS39485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39485.1 Public Mus musculus 6 Igf2bp3 23 108 98 CCDS HistoryNCBI Gene:140488Re-query CCDS DB by CCDS ID:39485.1Re-query CCDS DB by GeneID:140488See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39485.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031838.8 ENSMUSP00000031838.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031838.8Link to Ensembl Protein Viewer:ENSMUSP00000031838.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031838Re-query CCDS DB by Protein ID:ENSMUSP00000031838
Original member Current member NCBI NM_023670.3 NP_076159.3 Accepted alive Link to Nucleotide Sequence:NM_023670.3Link to Protein Sequence:NP_076159.3Re-query CCDS DB by Nucleotide ID:NM_023670Re-query CCDS DB by Protein ID:NP_076159Link to BLAST:NP_076159.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076159.3 579 Q9CPN8 579 100% 0 0

Chromosomal Locations for CCDS 39485.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49087342 49087440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49087768 49087881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49088430 49088561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49090976 49091050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49094140 49094256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49104174 49104299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49105570 49105705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49107342 49107464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49108926 49109060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49117152 49117433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49134695 49134758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49134847 49134898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49168470 49168518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49213267 49213327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49214297 49214471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGAACAAATTGTACATCGGGAACCTCAGCGACCACGCCGGCCCCGCGGACCTGGAAAGTGTCTTCAAGG
AC
GCTAAGATCCCGGTGGCGGGCCCCTTCCTGGTGAAGACGGGCTACGCGTTCGTGGACTGCCCGGACGA
G
GGCTGGGCCCTCAAGGCCATCGAGGCGCTTTCAGGTAAAATGGAACTACATGGGAAACCGATGGAAGTT
GAG
CACTCGGTCCCTAAACGGCAGAGGATTCGTAAACTTCAGATACGAAATATCCCGCCCCACTTACAAT
GG
GAGGTGCTGGATAGTTTACTAGTCCAGTATGGAGTGGTGGAGAGCTGTGAGCAAGTGAACACGGATTC
G
GAAACGGCAGTTGTAAATGTAACCTATTCCAGTAAGGACCAAGCTAGACAAGCCTTAGACAAACTGAAT
GGA
TTCCAGTTAGAGAACTTCACCTTGAAGGTTGCCTACATCCCAGATGAAACTGCTGCCCAGCAAAATC
CC
TCGCCACAGCTCCGGGGGCGCCGGGGGCCAGGGCAGCGGGGCTCATCCAGGCAGGCGTCTCCAGGATC
G
GTGTCCAAGCAGAAACCCTGTGACCTGCCACTGCGCCTGCTGGTTCCCACCCAGTTTGTTGGAGCCATT
ATA
GGAAAAGAAGGTGCTACCATTCGCAACATCACAAAGCAGACCCAGTCTAAAATCGATGTCCATCGTA
AG
GAGAATACAGGGGCCGCGGAGAAGTCCATTACTATCCTCTCTACCCCTGAAGGCACCTCTGCAGCTTG
T
AAGTCTATTCTGGAGATTATGCATAAGGAAGCTCAAGATATAAAATTCACAGAGGAGATTCCCTTGAAG
ATC
TTAGCTCACAATAACTTTGTAGGCCGTCTCATTGGTAAAGAAGGAAGAAACCTTAAAAAAATCGAGC
AA
GACACGGACACTAAAATCACAATATCTCCATTGCAGGAACTGACGCTGTACAATCCGGAACGCACCAT
T
ACAGTGAAAGGCAGTGTTGAGACGTGTGCCAAGGCGGAGGAGGAAATAATGAAGAAGATCAGGGAGTCT
TAT
GAAAATGATATTGCTTCCATGAATCTTCAAGCACATTTAATCCCTGGATTAAATCTGAATGCCTTGG
GT
CTGTTCCCACCCACGTCAGGGATGCCACCTCCCACCTCAGGGCCCCCTTCAACCCTGACTCCTCCCTA
C
CCACAATTTGAGCAATCAGAGACGGAGACTGTGCATCTGTTTATTCCCGCCCTGTCCGTTGGCGCCATC
ATT
GGCAAGCAGGGCCAACACATCAAACAGCTTTCTCGCTTTGCGGGAGCTTCGATTAAGATCGCTCCAG
CC
GAAGCACCAGATGCTAAAGTGCGGATGGTGATTATCACTGGACCACCAGAGGCTCAGTTCAAGGCTCA
G
GGAAGAATTTATGGAAAAATTAAAGAAGAAAACTTTGTTAGTCCTAAAGAAGAGGTGAAACTTGAAGCT
CAC
ATCAGAGTGCCGTCCTTTGCTGCTGGCAGAGTTATTGGGAAAGGAGGCAAAACGGTGAATGAGCTCC
AG
AGTTTATCAAGTGCTGAAGTTGTCGTCCCCCGTGACCAGACACCTGATGAGAATGATCAAGTAGTTGT
C
AAAATAACTGGCCACTTCTATGCTTGCCAGGTTGCCCAGAGGAAAATTCAGGAAATTCTGACTCAGGTA
AAG
CAGCACCAGCAGCAGAAAGCTCTGCAGAGTGGACCACCTCAGTCAAGGCGGAAGTAA


Translation (579 aa):
MNKLYIGNLSDHAGPADLESVFKDAKIPVAGPFLVKTGYAFVDCPDEGWALKAIEALSGKMELHGKPMEV
E
HSVPKRQ
RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLN
G
FQLENFTLKVAYIPDETAAQQNPSPQLRGRRGPGQRGSSRQASPGSVSKQKPCDLPLRLLVPTQFVGAI
I
GKEGATIRNITKQTQS
KIDVHRKENTGAAEKSITILSTPEGTSAACKSILEIMHKEAQDIKFTEEIPLK
I
LAHNNFVGRLIGKEGRNLKKIEQDTDTKITIS
PLQELTLYNPERTITVKGSVETCAKAEEEIMKKIRES
Y
ENDIASMN
LQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSTLTPPYPQFEQSETETVHLFIPALSVGAI
I
GKQGQHIKQLSRFAGASIK
IAPAEAPDAKVRMVIITGPPEAQFKAQGRIYGKIKEENFVSPKEEVKLEA
H
IRVPSFAAGRVIGKGGKT
VNELQSLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQV
K
QHQQQKALQSGPPQSRRK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser