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Report for CCDS50517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50517.1 Public Mus musculus 2 Potegl 23 108 98 CCDS HistoryNCBI Gene:70981Re-query CCDS DB by CCDS ID:50517.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028113.9 ENSMUSP00000028113.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028113.9Link to Ensembl Protein Viewer:ENSMUSP00000028113.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028113Re-query CCDS DB by Protein ID:ENSMUSP00000028113
Original member Current member NCBI NM_027635.1 NP_081911.1 Accepted alive Link to Nucleotide Sequence:NM_027635.1Link to Protein Sequence:NP_081911.1Re-query CCDS DB by Nucleotide ID:NM_027635Re-query CCDS DB by Protein ID:NP_081911Link to BLAST:NP_081911.1

Chromosomal Locations for CCDS 50517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 23207812 23208104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23212393 23212507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23212660 23212833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23226882 23226988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23230109 23230246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23233853 23233890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23240924 23240954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23245077 23245125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23256931 23257003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23263670 23263743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23266716 23266772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGGAGGAAAGTACAGCCGTGGGGAAGAGAGGAGGCCTTTGGGGTTTCCAGGCTTCTCTGCGCTGTGTT
GC
TGTCAGAAAACAAATAGGGAAGAGACCCCCTTGGGTTTCTGCGATATTAAGGCACGGAGAAGTAACCT
G
AGCTTTGGAAGGGAGGATCCTGCTTATTTAGACATGGCTTACTTTCCTGACAATGATCTGCACATGGCG
GCC
TGTGCAGGCGATTTACCTTTTGTGCGGCTGTACTTTACTCTGGGTAAATACGAAGTCAATCACAGAG
AC
AGGGAGAATAGGAATGCCATGCACTTTGCCTGCTTCTATGGACATTTAGAATTGGTGATATATCTCTG
G
AGGCGTGGTTGTGAGATTAATGTGTGTGACAATCATAACATCACACCCCTGATGAAGGCTGTCCAAAGC
TGG
GAAGATAAAATCGTGTGTTTTCTGCTAGAGCACCATGCTAACCTGCACATTAAAGACAGCATGGGTA
AC
ACTGCTCTGCACTATGCTGTCTATAGCGGGAATTTAGCAACGGCTGCCAGGCTGCTACAGTACGGAGC
A
GATATTGAGGAAAGGACAAAAGACAACCTCACACCACTCTTGCTTGCTCTCAGGGAGAACAGACTGAAG
ATG
GCACAATTCTTAGTAAGGATGGAAGCAAGCGTGCATGCAGTTGACTCACAGAGAAGAAATTCTCTCA
TG
TATGCTGTAAGGTGTGACTCACCAGTTATGGTCAACCTTATTCTTCAACAAGGTGTCGACATAAATTT
G
AAAGATTTATTTGGATGGACTGCTTTACGTTATGCTATTGAAGGTGATCGTGATGTGAGGACAATGCTT
TTG
GAGTTAAGAAAGAGAAATCGAGCATTTCAGAGTTCTGAAAACTCTTCAATCAGGCTTATCAACAAAG
CT
GATGCTGAAGTGACCTCACCTACGGCAAATGAGAAAGTGATTGAAATGCAAGACCCTTTTACAACCAA
T
GAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAGCAGAATCTGAACTAGAGGTGTTCTCATTAGAA
GAG
GAAATCAGTTACAAAGAGACTATAAATAATCTACAGCAGAACCCAGGACAACGAAGTGCAAAGACAG
AT
GCTGCCACTGAAAATCGAAGCCCATAG


Translation (382 aa):
MGGKYSRGEERRPLGFPGFSALCCCQKTNREETPLGFCDIKARRSNLSFGREDPAYLDMAYFPDNDLHMA
A
CAGDLPFVRLYFTLGKYEVNHRDREN
RNAMHFACFYGHLELVIYLWRRGCEINVCDNHNITPLMKAVQS
W
EDKIVCFLLEHHANLHIKDSMGNTALHYAVYSGNLATAARLLQYGADIEERTK
DNLTPLLLALRENRLK
M
AQFLVRMEASVHAVDSQR
RNSLMYAVRCDSPVMVNLILQQGVDINLKDLFGWTALRYAIEGDRDVRTML
L
ELRKRNR
AFQSSENSSIRLINKADAEVTSPTANEKVIEMQDPFTTNEASVEKTQTRRPAESELEVFSLE
E
EISYKETINNLQQ
NPGQRSAKTDAATENRSP



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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