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Report for CCDS17137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17137.1 Public Mus musculus 2 Spo11 23 108 98 CCDS HistoryNCBI Gene:26972Re-query CCDS DB by CCDS ID:17137.1Re-query CCDS DB by GeneID:26972See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050442.14 ENSMUSP00000059056.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050442.14Link to Ensembl Protein Viewer:ENSMUSP00000059056.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000050442Re-query CCDS DB by Protein ID:ENSMUSP00000059056
Original member NCBI NM_012046.2 NP_036176.1 Updated not alive Link to Nucleotide Sequence:NM_012046.2Link to Protein Sequence:NP_036176.1Re-query CCDS DB by Nucleotide ID:NM_012046Re-query CCDS DB by Protein ID:NP_036176
Current member NCBI NM_012046.3 NP_036176.1 Accepted alive Link to Nucleotide Sequence:NM_012046.3Link to Protein Sequence:NP_036176.1Re-query CCDS DB by Nucleotide ID:NM_012046Re-query CCDS DB by Protein ID:NP_036176Link to BLAST:NP_036176.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036176.1 396 Q9WTK8-1 396 100% 0 0

Chromosomal Locations for CCDS 17137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 172979894 172980024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172981979 172982092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172984016 172984104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172984872 172984938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172985397 172985505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172985904 172985990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172986792 172986828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172987128 172987237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172988931 172989030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172989368 172989405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172989924 172990000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172992046 172992157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172992984 172993103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGCGTTCGCGCCTATGGGGCCCGAGGCCTCGTTCTTCGACGCCCTGGATCGGCACAGGGCTTCCCTGT
TGGCCATGGTGAAGAGAGGCGCAGGGGAGACCCCTGCCGGGGCCACCCGCGTGGCCTCTAGTTCTGAGGT
TCTTACAGCTATAGAAAATATTATCCAAGACATAATCAAAAGCTTGGCAAGAAATGAAGTGCCTGCCTTC
ACAATAGACAACAGATCGAGCTGGGAAAACATAATGTTTGATGATTCTGTCGGCCTTCGGATGATACCTC
AGTGTACCACAAGAAAAATCAGAAGCGATTCACCAAAATCAGTTAAGAAATTCGCTCTGATTCTGAAAGT
ATTGTCCATGATTTATAAATTAATACAGAGCGACACTTATGCAACCAAGAGAGACATATACTACACTGAC
AGCCAGCTCTTTGGGAACCAGGCTGCGGTGGACAGCGCCATCGATGACATTTCCTGTATGCTGAAAGTGC
CCAGGAGGAGTCTGCACGTGCTATCTACTTCCAAGGGATTGATTGCTGGCAACTTGAGATACATGGAGGA
AGATGGTACCAGAGTCCAGTGTACCTGTAGTGCCACGGCTACTGCTGTGCCGACTAACATTCAAGGAATG
CAGCATCTGATCACAGATGCGAAGTTTCTGTTAATAGTCGAGAAGGATGCAACATTTCAGCGGCTCCTGG
ACGACAACTTCTGCAGCAGGATGTCCCCGTGCATCATGGTTACGGGAAAGGGCGTTCCAGATCTGAACAC
GAGGCTCTTGGTAAAGAAGCTGTGGGACACCTTTCATATTCCTGTTTTCACACTGGTCGATGCAGATCCC
TACGGCATCGAGATAATGTGCATCTATAAGTACGGATCCATGTCCATGTCTTTTGAAGCTCACAATCTCA
CTATCCCAACAATCAGATGGCTTGGTCTCCTCCCTTCTGATATCCAGAGGTTAAATATACCTAAGGATAG
TTTGATCCCACTGACAAAGCATGACCAGATGAAGCTGGACAGCATCCTGAAGAGGCCTTACATTACCTAC
CAGCCCCTCTGGAAAAAAGAGCTGGAGATGATGGCAGACTCTAAGATGAAGGCAGAGATCCAAGCCTTGA
CCTTGCTGTCGTCAGACTACCTGTCCAGAGTGTACTTACCCAACAAGCTGAGGTTTGGAGGATGGATCTA
A

Translation (396 aa):
MAFAPMGPEASFFDALDRHRASLLAMVKRGAGETPAGATRVASSSEVLTAIENIIQDIIKSLARNEVPAF
TIDNRSSWENIMFDDSVGLRMIPQCTTRKIRSDSPKSVKKFALILKVLSMIYKLIQSDTYATKRDIYYTD
SQLFGNQAAVDSAIDDISCMLKVPRRSLHVLSTSKGLIAGNLRYMEEDGTRVQCTCSATATAVPTNIQGM
QHLITDAKFLLIVEKDATFQRLLDDNFCSRMSPCIMVTGKGVPDLNTRLLVKKLWDTFHIPVFTLVDADP
YGIEIMCIYKYGSMSMSFEAHNLTIPTIRWLGLLPSDIQRLNIPKDSLIPLTKHDQMKLDSILKRPYITY
QPLWKKELEMMADSKMKAEIQALTLLSSDYLSRVYLPNKLRFGGWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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