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Report for CCDS88484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88484.1 Public Mus musculus 13 Pdcd6 23 108 98 CCDS HistoryNCBI Gene:18570Re-query CCDS DB by CCDS ID:88484.1Re-query CCDS DB by GeneID:18570See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88484.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000222759.1 ENSMUSP00000152458.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222759.1Link to Ensembl Protein Viewer:ENSMUSP00000152458.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222759Re-query CCDS DB by Protein ID:ENSMUSP00000152458
Original member Current member NCBI NM_001359996.1 NP_001346925.1 Accepted alive Link to Nucleotide Sequence:NM_001359996.1Link to Protein Sequence:NP_001346925.1Re-query CCDS DB by Nucleotide ID:NM_001359996Re-query CCDS DB by Protein ID:NP_001346925Link to BLAST:NP_001346925.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346925.1 189 P12815-2 189 100% 0 0

Chromosomal Locations for CCDS 88484.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 74303950 74304048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74305541 74305650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74309690 74309842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74311668 74311712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74316330 74316391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74317107 74317207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGCTGCCTACTCCTACCGCCCAGGCCCGGGTGGTGGCCCCGGCCCTGCTGCTGGAGCTGCACTGCCAG
ACCAGAGCTTCCTGTGGAACGTCTTCCAGCGGGTTGATAAAGACAGGAGTGGAGTGATTTCAGACAATGA
GCTTCAGCAAGCATTATCCAATGGTACATGGACTCCATTTAACCCAGTGACTGTGAGGTCAATCATTTCT
ATGTTTGACCGAGAAAACAAGGCTGGTGTGAACTTCAGTGAATTCACGGGTGTGTGGAAGTATATCACAG
ACTGGCAGAATGTCTTCCGGACCTACGACAGGGACAACTCTGGGATGATTGACAAGAACGAGCTCAAACA
AGCACTCTCAGGCTACCGGCTCTCTGATCAGTTCCATGACATCCTCATCCGAAAATTTGACAGGCAAGGA
CGGGGCCAGATCGCATTTGATGACTTCATCCAGGGCTGCATCGTCTTGCAGAGGTTGACAGACATATTCA
GACGCTATGACACGGATCAGGATGGCTGGATTCAGGTGTCTTATGAGCAATATCTCTCCATGGTCTTCAG
CATTGTATAA

Translation (189 aa):
MAAYSYRPGPGGGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIIS
MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGYRLSDQFHDILIRKFDRQG
RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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