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Report for CCDS25356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25356.1 Public Mus musculus 11 Gsdma3 23 108 98 CCDS HistoryNCBI Gene:450219Re-query CCDS DB by CCDS ID:25356.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25356.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073295.2 ENSMUSP00000073022.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073295.2Link to Ensembl Protein Viewer:ENSMUSP00000073022.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073295Re-query CCDS DB by Protein ID:ENSMUSP00000073022
Original member Current member NCBI NM_001007461.2 NP_001007462.1 Accepted alive Link to Nucleotide Sequence:NM_001007461.2Link to Protein Sequence:NP_001007462.1Re-query CCDS DB by Nucleotide ID:NM_001007461Re-query CCDS DB by Protein ID:NP_001007462Link to BLAST:NP_001007462.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007462.1 464 Q5Y4Y6 464 100% 0 0

Chromosomal Locations for CCDS 25356.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98629352 98629565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98629759 98629939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98631141 98631306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98632347 98632443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98632901 98632996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98633314 98633340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98635206 98635360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98635825 98635939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98637528 98637601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98637820 98638089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGCCTGTGTTTGAGGATGTCACCCGGGCCCTGGTTAGAGAGCTGAACCCTCGAGGGGATCTGACACCCC
TA
GACAGCCTCATCGACTTCAAACACTTTCGTCCCTTCTGCCTGGTGCTGAGGAAGAGGAAGAGCACATT
G
TTCTGGGGAGCCCGCTATGTGCGCACCGACTACACTCTCCTGGATTTGCTGGAGCCGGGCAGCTCCCCC
TCA
GATCTGACAGACAGTGGCAACTTTAGCTTTAAGAATATGCTGGATGTCCAAGTACAGGGACTTGTGG
AA
GTGCCAAAGACAGTGAAGGTAAAGGGGACTGCGGGTCTGTCACAAAGCAGCACACTGGAGGTGCAGAC
A
CTCAGCGTGGCTCCCTCGGCTCTGGAGAACTTGAAGAAGGAGAGGAAACTGTCAGCAGACCACTCGTTC
CTG
AACGAGATGAGGTATCATGAGAAGAACCTGTATGTGGTGATGGAGGCAGTAGAAGCCAAGCAGGAAG
TT
ACTGTGGAGCAAACTGGCAACGCAAATGCCATCTTCTCTCTCCCCAGCTTGGCTCTACTGGGACTACA
G
GGATCCTTGAACAACAACAAGGCTGTAACCATCCCCAAGGGCTGTGTCCTGGCCTATCGAGTGAGACTA
CTG
AGAGTCTTTTTGTTCAATCTTTGGGATATTCCGTACATTTGCAATGACAGCATGCAAACCTTCCCTA
AG
ATCAGGCGTGTACCTTGCAGTGCCTTCATATCTCCTACCCAGATGATATCTGAAGAGCCAGAAGAAGA
G
AAGCTCATTGGGGAGATGCACGAAGACTTCAAGACATTAAAGGAAGAGGTTCAGCGAGAGACTCAAGAA
GTG
GAGAAGTTGAGTCCAGTGGGTCGAAGCTCCCTACTCACTTCCCTCAGCCATCTCCTAGGAAAGAAGA
AA
GAGCTCCAGGACCTTGAGCAGAAGCTTGAAGGGGCTTTAGACAAGGGTCAGAAAGTGACCCTGGAAGC
A
CTCCCCAAAGATGTCCTGCTGTCAAAGGACGCTATGGATGCCATCCTCTACTTCCTCGGGGCTCTGACA
G
AG
CTAACTGAAGAACAACTGAAGATTCTAGTAAAATCCTTGGAGAAAAAGATCTTACCAGTGCAACTGA
AG
CTGGTTGAAAGCACCTTGGAGCAGAACTTCCTGCAAGATAAAGAGGGTGTTTTCCCCCTGCAACCTGA
T
CTGCTCTCCTCCCTCGGGGAGGAGGAACTGACCCTAACGGAAGCACTGGTGGGACTAAGCGGCCTGGAA
GTC
CAGAGATCAGGCCCCCAGTACGCGTGGGATCCAGACACTCGCCACAACCTTTGTGCCCTCTATGCTG
GC
CTCTCCCTCCTTCACCTGCTAAGCAGGAAATCTAATGCACTTACTTATTGTGCTCTATCTTAA


Translation (464 aa):
MPVFEDVTRALVRELNPRGDLTPLDSLIDFKHFRPFCLVLRKRKSTLFWGARYVRTDYTLLDLLEPGSSP
S
DLTDSGNFSFKNMLDVQVQGLVEVPKTVKVKGTAGLSQSSTLEVQTLSVAPSALENLKKERKLSADHSF
L
NEMRYHEKNLYVVMEAVEAKQEVTVEQTGNANAIFSLPSLALLGLQ
GSLNNNKAVTIPKGCVLAYRVRL
L
RVFLFNLW
DIPYICNDSMQTFPKIRRVPCSAFISPTQMISEEPEEEKLIGEMHEDFKTLKEEVQRETQE
V
EKLSPVGRSSLLTSLSHLLGKKKELQDLEQK
LEGALDKGQKVTLEALPKDVLLSKDAMDAILYFLGALT
E
LTEEQLKILVKSLEKKILPVQLKLVESTLEQNFLQDKEGVFPLQPDLLSSLGEEELTLTEALVGLSGLE
V
QRSGPQYAWDPDTRHNLCALYAGLSLLHLLSRKSNALTYCALS




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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